Hb_032050_030

Information

Type -
Description -
Location Contig32050: 10052-10582
Sequence    

Annotation

kegg
ID rcu:RCOM_0960630
description C, putative
nr
ID XP_002524313.1
description C, putative [Ricinus communis]
swissprot
ID Q8GT41
description Putative invertase inhibitor OS=Platanus acerifolia PE=1 SV=1
trembl
ID B9SE94
description C, putative OS=Ricinus communis GN=RCOM_0960630 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032050_030 0.0 - - C, putative [Ricinus communis]
2 Hb_000152_400 0.0096993177 - - PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]
3 Hb_020332_020 0.0119663824 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
4 Hb_030370_080 0.0148679825 - - hypothetical protein SELMODRAFT_100988 [Selaginella moellendorffii]
5 Hb_002112_030 0.0157694552 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
6 Hb_153625_010 0.0220892681 - - PREDICTED: 21 kDa protein [Populus euphratica]
7 Hb_000202_110 0.0276104907 - - PREDICTED: uncharacterized protein LOC103948916 [Pyrus x bretschneideri]
8 Hb_003060_130 0.0280924324 - - PREDICTED: protein P21-like [Jatropha curcas]
9 Hb_100648_020 0.0285223257 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
10 Hb_004093_070 0.0305850036 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
11 Hb_179061_010 0.0387734074 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
12 Hb_001148_010 0.0438463219 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
13 Hb_003653_040 0.0469976075 - - hypothetical protein SORBIDRAFT_05g024215 [Sorghum bicolor]
14 Hb_000330_110 0.0511340463 - - -
15 Hb_135174_010 0.0515754322 - - Glycosyl hydrolase family protein 43 isoform 2 [Theobroma cacao]
16 Hb_004528_030 0.0516000438 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
17 Hb_001140_310 0.0516042979 - - hypothetical protein AMTR_s00025p00025050 [Amborella trichopoda]
18 Hb_008021_030 0.0525620472 - - short-chain dehydrogenase, putative [Ricinus communis]
19 Hb_000152_470 0.0526418781 - - -
20 Hb_020956_050 0.0555560678 - - PREDICTED: uncharacterized protein LOC102670328 [Glycine max]

Gene co-expression network

sample Hb_032050_030 Hb_032050_030 Hb_000152_400 Hb_000152_400 Hb_032050_030--Hb_000152_400 Hb_020332_020 Hb_020332_020 Hb_032050_030--Hb_020332_020 Hb_030370_080 Hb_030370_080 Hb_032050_030--Hb_030370_080 Hb_002112_030 Hb_002112_030 Hb_032050_030--Hb_002112_030 Hb_153625_010 Hb_153625_010 Hb_032050_030--Hb_153625_010 Hb_000202_110 Hb_000202_110 Hb_032050_030--Hb_000202_110 Hb_000152_400--Hb_020332_020 Hb_000152_400--Hb_000202_110 Hb_003060_130 Hb_003060_130 Hb_000152_400--Hb_003060_130 Hb_000152_400--Hb_030370_080 Hb_000152_400--Hb_002112_030 Hb_020332_020--Hb_000202_110 Hb_020332_020--Hb_003060_130 Hb_020332_020--Hb_030370_080 Hb_020332_020--Hb_002112_030 Hb_030370_080--Hb_002112_030 Hb_030370_080--Hb_153625_010 Hb_100648_020 Hb_100648_020 Hb_030370_080--Hb_100648_020 Hb_004093_070 Hb_004093_070 Hb_030370_080--Hb_004093_070 Hb_179061_010 Hb_179061_010 Hb_030370_080--Hb_179061_010 Hb_002112_030--Hb_153625_010 Hb_002112_030--Hb_100648_020 Hb_002112_030--Hb_004093_070 Hb_002112_030--Hb_179061_010 Hb_153625_010--Hb_100648_020 Hb_153625_010--Hb_004093_070 Hb_153625_010--Hb_179061_010 Hb_000202_110--Hb_003060_130 Hb_001148_010 Hb_001148_010 Hb_000202_110--Hb_001148_010 Hb_003653_040 Hb_003653_040 Hb_000202_110--Hb_003653_040 Hb_135174_010 Hb_135174_010 Hb_000202_110--Hb_135174_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0558939 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.181191

CAGE analysis