Hb_000202_110

Information

Type -
Description -
Location Contig202: 317681-318446
Sequence    

Annotation

kegg
ID pxb:103948916
description uncharacterized LOC103948916
nr
ID XP_009358280.1
description PREDICTED: uncharacterized protein LOC103948916 [Pyrus x bretschneideri]
swissprot
ID -
description -
trembl
ID A0A0D2PPP3
description Gossypium raimondii chromosome 1, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_001G106200 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000202_110 0.0 - - PREDICTED: uncharacterized protein LOC103948916 [Pyrus x bretschneideri]
2 Hb_003060_130 0.0004821929 - - PREDICTED: protein P21-like [Jatropha curcas]
3 Hb_020332_020 0.0156474918 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
4 Hb_001148_010 0.0162493911 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
5 Hb_000152_400 0.0179143014 - - PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]
6 Hb_003653_040 0.0194045642 - - hypothetical protein SORBIDRAFT_05g024215 [Sorghum bicolor]
7 Hb_135174_010 0.0239887925 - - Glycosyl hydrolase family protein 43 isoform 2 [Theobroma cacao]
8 Hb_004528_030 0.024013441 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
9 Hb_001140_310 0.0240177014 - - hypothetical protein AMTR_s00025p00025050 [Amborella trichopoda]
10 Hb_008021_030 0.0249769067 - - short-chain dehydrogenase, putative [Ricinus communis]
11 Hb_032050_030 0.0276104907 - - C, putative [Ricinus communis]
12 Hb_020956_050 0.0279757388 - - PREDICTED: uncharacterized protein LOC102670328 [Glycine max]
13 Hb_001192_020 0.0391242135 - - -
14 Hb_003370_040 0.0408309892 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
15 Hb_030370_080 0.0424675371 - - hypothetical protein SELMODRAFT_100988 [Selaginella moellendorffii]
16 Hb_002112_030 0.0433681173 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
17 Hb_000088_280 0.0452053252 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
18 Hb_187301_010 0.0486779572 - - PREDICTED: uncharacterized protein LOC105629082 [Jatropha curcas]
19 Hb_011540_050 0.0489732109 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_153625_010 0.0496809628 - - PREDICTED: 21 kDa protein [Populus euphratica]

Gene co-expression network

sample Hb_000202_110 Hb_000202_110 Hb_003060_130 Hb_003060_130 Hb_000202_110--Hb_003060_130 Hb_020332_020 Hb_020332_020 Hb_000202_110--Hb_020332_020 Hb_001148_010 Hb_001148_010 Hb_000202_110--Hb_001148_010 Hb_000152_400 Hb_000152_400 Hb_000202_110--Hb_000152_400 Hb_003653_040 Hb_003653_040 Hb_000202_110--Hb_003653_040 Hb_135174_010 Hb_135174_010 Hb_000202_110--Hb_135174_010 Hb_003060_130--Hb_001148_010 Hb_003060_130--Hb_020332_020 Hb_003060_130--Hb_000152_400 Hb_003060_130--Hb_003653_040 Hb_003060_130--Hb_135174_010 Hb_020332_020--Hb_000152_400 Hb_032050_030 Hb_032050_030 Hb_020332_020--Hb_032050_030 Hb_030370_080 Hb_030370_080 Hb_020332_020--Hb_030370_080 Hb_002112_030 Hb_002112_030 Hb_020332_020--Hb_002112_030 Hb_001148_010--Hb_003653_040 Hb_001148_010--Hb_135174_010 Hb_004528_030 Hb_004528_030 Hb_001148_010--Hb_004528_030 Hb_001140_310 Hb_001140_310 Hb_001148_010--Hb_001140_310 Hb_008021_030 Hb_008021_030 Hb_001148_010--Hb_008021_030 Hb_020956_050 Hb_020956_050 Hb_001148_010--Hb_020956_050 Hb_000152_400--Hb_032050_030 Hb_000152_400--Hb_030370_080 Hb_000152_400--Hb_002112_030 Hb_003653_040--Hb_135174_010 Hb_003653_040--Hb_004528_030 Hb_003653_040--Hb_001140_310 Hb_003653_040--Hb_008021_030 Hb_003653_040--Hb_020956_050 Hb_135174_010--Hb_004528_030 Hb_135174_010--Hb_001140_310 Hb_135174_010--Hb_008021_030 Hb_135174_010--Hb_020956_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.037528 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.142264

CAGE analysis