Hb_020332_020

Information

Type -
Description -
Location Contig20332: 13754-27817
Sequence    

Annotation

kegg
ID rcu:RCOM_0137140
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_012073972.1
description PREDICTED: receptor-like protein 12 [Jatropha curcas]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID B9SJG3
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0137140 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20841: 13295-14101
cDNA
(Sanger)
(ID:Location)		 015_P07.ab1: 13296-14101

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020332_020 0.0 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
2 Hb_000152_400 0.0022672321 - - PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]
3 Hb_032050_030 0.0119663824 - - C, putative [Ricinus communis]
4 Hb_000202_110 0.0156474918 - - PREDICTED: uncharacterized protein LOC103948916 [Pyrus x bretschneideri]
5 Hb_003060_130 0.0161296013 - - PREDICTED: protein P21-like [Jatropha curcas]
6 Hb_030370_080 0.0268314412 - - hypothetical protein SELMODRAFT_100988 [Selaginella moellendorffii]
7 Hb_002112_030 0.0277326369 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
8 Hb_001148_010 0.0318911802 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
9 Hb_153625_010 0.0340501983 - - PREDICTED: 21 kDa protein [Populus euphratica]
10 Hb_003653_040 0.035044533 - - hypothetical protein SORBIDRAFT_05g024215 [Sorghum bicolor]
11 Hb_135174_010 0.0396256868 - - Glycosyl hydrolase family protein 43 isoform 2 [Theobroma cacao]
12 Hb_004528_030 0.0396503174 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
13 Hb_001140_310 0.0396545748 - - hypothetical protein AMTR_s00025p00025050 [Amborella trichopoda]
14 Hb_100648_020 0.0404804193 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
15 Hb_008021_030 0.0406130707 - - short-chain dehydrogenase, putative [Ricinus communis]
16 Hb_004093_070 0.042542074 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
17 Hb_020956_050 0.0436095373 - - PREDICTED: uncharacterized protein LOC102670328 [Glycine max]
18 Hb_179061_010 0.0507258847 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
19 Hb_001192_020 0.0547472039 - - -
20 Hb_003370_040 0.0564520373 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]

Gene co-expression network

sample Hb_020332_020 Hb_020332_020 Hb_000152_400 Hb_000152_400 Hb_020332_020--Hb_000152_400 Hb_032050_030 Hb_032050_030 Hb_020332_020--Hb_032050_030 Hb_000202_110 Hb_000202_110 Hb_020332_020--Hb_000202_110 Hb_003060_130 Hb_003060_130 Hb_020332_020--Hb_003060_130 Hb_030370_080 Hb_030370_080 Hb_020332_020--Hb_030370_080 Hb_002112_030 Hb_002112_030 Hb_020332_020--Hb_002112_030 Hb_000152_400--Hb_032050_030 Hb_000152_400--Hb_000202_110 Hb_000152_400--Hb_003060_130 Hb_000152_400--Hb_030370_080 Hb_000152_400--Hb_002112_030 Hb_032050_030--Hb_030370_080 Hb_032050_030--Hb_002112_030 Hb_153625_010 Hb_153625_010 Hb_032050_030--Hb_153625_010 Hb_032050_030--Hb_000202_110 Hb_000202_110--Hb_003060_130 Hb_001148_010 Hb_001148_010 Hb_000202_110--Hb_001148_010 Hb_003653_040 Hb_003653_040 Hb_000202_110--Hb_003653_040 Hb_135174_010 Hb_135174_010 Hb_000202_110--Hb_135174_010 Hb_003060_130--Hb_001148_010 Hb_003060_130--Hb_003653_040 Hb_003060_130--Hb_135174_010 Hb_030370_080--Hb_002112_030 Hb_030370_080--Hb_153625_010 Hb_100648_020 Hb_100648_020 Hb_030370_080--Hb_100648_020 Hb_004093_070 Hb_004093_070 Hb_030370_080--Hb_004093_070 Hb_179061_010 Hb_179061_010 Hb_030370_080--Hb_179061_010 Hb_002112_030--Hb_153625_010 Hb_002112_030--Hb_100648_020 Hb_002112_030--Hb_004093_070 Hb_002112_030--Hb_179061_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0204188 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0707773

CAGE analysis