Hb_153625_010

Information

Type -
Description -
Location Contig153625: 1351-1943
Sequence    

Annotation

kegg
ID pop:POPTR_0014s12390g
description POPTRDRAFT_1099186; hypothetical protein
nr
ID XP_011033536.1
description PREDICTED: 21 kDa protein [Populus euphratica]
swissprot
ID P17407
description 21 kDa protein OS=Daucus carota PE=2 SV=1
trembl
ID B9I9R5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s12390g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_153625_010 0.0 - - PREDICTED: 21 kDa protein [Populus euphratica]
2 Hb_002112_030 0.006321093 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
3 Hb_100648_020 0.0064353716 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
4 Hb_030370_080 0.0072226665 - - hypothetical protein SELMODRAFT_100988 [Selaginella moellendorffii]
5 Hb_004093_070 0.0084990028 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
6 Hb_179061_010 0.0166921799 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
7 Hb_032050_030 0.0220892681 - - C, putative [Ricinus communis]
8 Hb_000330_110 0.0290629221 - - -
9 Hb_000152_470 0.0305722175 - - -
10 Hb_000152_400 0.0317844747 - - PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]
11 Hb_020332_020 0.0340501983 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
12 Hb_055467_010 0.0396075584 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
13 Hb_003003_060 0.0483668035 - - -
14 Hb_000202_110 0.0496809628 - - PREDICTED: uncharacterized protein LOC103948916 [Pyrus x bretschneideri]
15 Hb_003060_130 0.0501623768 - - PREDICTED: protein P21-like [Jatropha curcas]
16 Hb_004643_050 0.0507537626 - - hypothetical protein B456_001G165500 [Gossypium raimondii]
17 Hb_001148_010 0.0658949952 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
18 Hb_001900_050 0.0678564437 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
19 Hb_003653_040 0.0690410613 - - hypothetical protein SORBIDRAFT_05g024215 [Sorghum bicolor]
20 Hb_000275_030 0.0714560387 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_153625_010 Hb_153625_010 Hb_002112_030 Hb_002112_030 Hb_153625_010--Hb_002112_030 Hb_100648_020 Hb_100648_020 Hb_153625_010--Hb_100648_020 Hb_030370_080 Hb_030370_080 Hb_153625_010--Hb_030370_080 Hb_004093_070 Hb_004093_070 Hb_153625_010--Hb_004093_070 Hb_179061_010 Hb_179061_010 Hb_153625_010--Hb_179061_010 Hb_032050_030 Hb_032050_030 Hb_153625_010--Hb_032050_030 Hb_002112_030--Hb_030370_080 Hb_002112_030--Hb_100648_020 Hb_002112_030--Hb_004093_070 Hb_002112_030--Hb_032050_030 Hb_002112_030--Hb_179061_010 Hb_100648_020--Hb_004093_070 Hb_100648_020--Hb_179061_010 Hb_100648_020--Hb_030370_080 Hb_000330_110 Hb_000330_110 Hb_100648_020--Hb_000330_110 Hb_030370_080--Hb_032050_030 Hb_030370_080--Hb_004093_070 Hb_030370_080--Hb_179061_010 Hb_004093_070--Hb_179061_010 Hb_004093_070--Hb_000330_110 Hb_179061_010--Hb_000330_110 Hb_000152_470 Hb_000152_470 Hb_179061_010--Hb_000152_470 Hb_055467_010 Hb_055467_010 Hb_179061_010--Hb_055467_010 Hb_000152_400 Hb_000152_400 Hb_032050_030--Hb_000152_400 Hb_020332_020 Hb_020332_020 Hb_032050_030--Hb_020332_020 Hb_000202_110 Hb_000202_110 Hb_032050_030--Hb_000202_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0625732 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.179786

CAGE analysis