Hb_030370_080

Information

Type -
Description -
Location Contig30370: 91396-96530
Sequence    

Annotation

kegg
ID smo:SELMODRAFT_100988
description hypothetical protein
nr
ID XP_002974227.1
description hypothetical protein SELMODRAFT_100988 [Selaginella moellendorffii]
swissprot
ID -
description -
trembl
ID D8RT55
description Putative uncharacterized protein OS=Selaginella moellendorffii GN=SELMODRAFT_100988 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at1g12460

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030370_080 0.0 - - hypothetical protein SELMODRAFT_100988 [Selaginella moellendorffii]
2 Hb_002112_030 0.0009015969 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
3 Hb_153625_010 0.0072226665 - - PREDICTED: 21 kDa protein [Populus euphratica]
4 Hb_100648_020 0.0136576833 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
5 Hb_032050_030 0.0148679825 - - C, putative [Ricinus communis]
6 Hb_004093_070 0.0157211316 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
7 Hb_179061_010 0.0239132583 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
8 Hb_000152_400 0.024565138 - - PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]
9 Hb_020332_020 0.0268314412 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
10 Hb_000330_110 0.0362814643 - - -
11 Hb_000152_470 0.0377903745 - - -
12 Hb_000202_110 0.0424675371 - - PREDICTED: uncharacterized protein LOC103948916 [Pyrus x bretschneideri]
13 Hb_003060_130 0.0429491533 - - PREDICTED: protein P21-like [Jatropha curcas]
14 Hb_055467_010 0.0468230745 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
15 Hb_003003_060 0.0555792266 - - -
16 Hb_004643_050 0.0579652542 - - hypothetical protein B456_001G165500 [Gossypium raimondii]
17 Hb_001148_010 0.058689689 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
18 Hb_003653_040 0.0618376521 - - hypothetical protein SORBIDRAFT_05g024215 [Sorghum bicolor]
19 Hb_135174_010 0.0664102495 - - Glycosyl hydrolase family protein 43 isoform 2 [Theobroma cacao]
20 Hb_004528_030 0.0664348317 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]

Gene co-expression network

sample Hb_030370_080 Hb_030370_080 Hb_002112_030 Hb_002112_030 Hb_030370_080--Hb_002112_030 Hb_153625_010 Hb_153625_010 Hb_030370_080--Hb_153625_010 Hb_100648_020 Hb_100648_020 Hb_030370_080--Hb_100648_020 Hb_032050_030 Hb_032050_030 Hb_030370_080--Hb_032050_030 Hb_004093_070 Hb_004093_070 Hb_030370_080--Hb_004093_070 Hb_179061_010 Hb_179061_010 Hb_030370_080--Hb_179061_010 Hb_002112_030--Hb_153625_010 Hb_002112_030--Hb_100648_020 Hb_002112_030--Hb_004093_070 Hb_002112_030--Hb_032050_030 Hb_002112_030--Hb_179061_010 Hb_153625_010--Hb_100648_020 Hb_153625_010--Hb_004093_070 Hb_153625_010--Hb_179061_010 Hb_153625_010--Hb_032050_030 Hb_100648_020--Hb_004093_070 Hb_100648_020--Hb_179061_010 Hb_000330_110 Hb_000330_110 Hb_100648_020--Hb_000330_110 Hb_000152_400 Hb_000152_400 Hb_032050_030--Hb_000152_400 Hb_020332_020 Hb_020332_020 Hb_032050_030--Hb_020332_020 Hb_000202_110 Hb_000202_110 Hb_032050_030--Hb_000202_110 Hb_004093_070--Hb_179061_010 Hb_004093_070--Hb_000330_110 Hb_179061_010--Hb_000330_110 Hb_000152_470 Hb_000152_470 Hb_179061_010--Hb_000152_470 Hb_055467_010 Hb_055467_010 Hb_179061_010--Hb_055467_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.066926 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.19995

CAGE analysis