Hb_000152_470

Information

Type -
Description -
Location Contig152: 407797-415878
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_470 0.0 - - -
2 Hb_000330_110 0.0015099864 - - -
3 Hb_055467_010 0.0090409026 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
4 Hb_179061_010 0.0138837458 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
5 Hb_003003_060 0.0178078157 - - -
6 Hb_004643_050 0.0201972431 - - hypothetical protein B456_001G165500 [Gossypium raimondii]
7 Hb_004093_070 0.0220762496 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
8 Hb_100648_020 0.0241393657 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
9 Hb_153625_010 0.0305722175 - - PREDICTED: 21 kDa protein [Populus euphratica]
10 Hb_002112_030 0.0368894627 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
11 Hb_001900_050 0.0373221947 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
12 Hb_030370_080 0.0377903745 - - hypothetical protein SELMODRAFT_100988 [Selaginella moellendorffii]
13 Hb_000275_030 0.0409274737 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003623_060 0.0509795641 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000062_040 0.0518914915 - - PREDICTED: uncharacterized protein LOC105766209 [Gossypium raimondii]
16 Hb_032050_030 0.0526418781 - - C, putative [Ricinus communis]
17 Hb_000152_400 0.0623228358 - - PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]
18 Hb_020332_020 0.06458471 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
19 Hb_002527_020 0.0658720575 - - PREDICTED: F-box protein At1g30790-like [Jatropha curcas]
20 Hb_002857_010 0.0673881714 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]

Gene co-expression network

sample Hb_000152_470 Hb_000152_470 Hb_000330_110 Hb_000330_110 Hb_000152_470--Hb_000330_110 Hb_055467_010 Hb_055467_010 Hb_000152_470--Hb_055467_010 Hb_179061_010 Hb_179061_010 Hb_000152_470--Hb_179061_010 Hb_003003_060 Hb_003003_060 Hb_000152_470--Hb_003003_060 Hb_004643_050 Hb_004643_050 Hb_000152_470--Hb_004643_050 Hb_004093_070 Hb_004093_070 Hb_000152_470--Hb_004093_070 Hb_000330_110--Hb_055467_010 Hb_000330_110--Hb_179061_010 Hb_000330_110--Hb_003003_060 Hb_000330_110--Hb_004093_070 Hb_000330_110--Hb_004643_050 Hb_055467_010--Hb_003003_060 Hb_055467_010--Hb_004643_050 Hb_055467_010--Hb_179061_010 Hb_001900_050 Hb_001900_050 Hb_055467_010--Hb_001900_050 Hb_179061_010--Hb_004093_070 Hb_100648_020 Hb_100648_020 Hb_179061_010--Hb_100648_020 Hb_153625_010 Hb_153625_010 Hb_179061_010--Hb_153625_010 Hb_003003_060--Hb_004643_050 Hb_003003_060--Hb_001900_050 Hb_000275_030 Hb_000275_030 Hb_003003_060--Hb_000275_030 Hb_004643_050--Hb_001900_050 Hb_004643_050--Hb_000275_030 Hb_004093_070--Hb_100648_020 Hb_004093_070--Hb_153625_010 Hb_002112_030 Hb_002112_030 Hb_004093_070--Hb_002112_030 Hb_030370_080 Hb_030370_080 Hb_004093_070--Hb_030370_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0870431 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.212801

CAGE analysis