Hb_003003_060

Information

Type -
Description -
Location Contig3003: 62331-67089
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003003_060 0.0 - - -
2 Hb_004643_050 0.0023898336 - - hypothetical protein B456_001G165500 [Gossypium raimondii]
3 Hb_055467_010 0.0087675889 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
4 Hb_000152_470 0.0178078157 - - -
5 Hb_000330_110 0.0193175503 - - -
6 Hb_001900_050 0.0195203905 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
7 Hb_000275_030 0.0231274367 - - conserved hypothetical protein [Ricinus communis]
8 Hb_179061_010 0.0316877059 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
9 Hb_003623_060 0.0331854969 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000062_040 0.0340980407 - - PREDICTED: uncharacterized protein LOC105766209 [Gossypium raimondii]
11 Hb_004093_070 0.0398762721 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
12 Hb_100648_020 0.0419381963 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
13 Hb_002527_020 0.0480895719 - - PREDICTED: F-box protein At1g30790-like [Jatropha curcas]
14 Hb_153625_010 0.0483668035 - - PREDICTED: 21 kDa protein [Populus euphratica]
15 Hb_002857_010 0.049607043 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
16 Hb_043346_010 0.0518172955 - - PREDICTED: uncharacterized protein LOC105761922 [Gossypium raimondii]
17 Hb_002112_030 0.0546790875 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
18 Hb_001695_050 0.054738575 - - PREDICTED: uncharacterized protein LOC104884077 [Beta vulgaris subsp. vulgaris]
19 Hb_030370_080 0.0555792266 - - hypothetical protein SELMODRAFT_100988 [Selaginella moellendorffii]
20 Hb_008493_010 0.0618054991 - - hypothetical protein JCGZ_10529 [Jatropha curcas]

Gene co-expression network

sample Hb_003003_060 Hb_003003_060 Hb_004643_050 Hb_004643_050 Hb_003003_060--Hb_004643_050 Hb_055467_010 Hb_055467_010 Hb_003003_060--Hb_055467_010 Hb_000152_470 Hb_000152_470 Hb_003003_060--Hb_000152_470 Hb_000330_110 Hb_000330_110 Hb_003003_060--Hb_000330_110 Hb_001900_050 Hb_001900_050 Hb_003003_060--Hb_001900_050 Hb_000275_030 Hb_000275_030 Hb_003003_060--Hb_000275_030 Hb_004643_050--Hb_055467_010 Hb_004643_050--Hb_001900_050 Hb_004643_050--Hb_000152_470 Hb_004643_050--Hb_000275_030 Hb_004643_050--Hb_000330_110 Hb_055467_010--Hb_000152_470 Hb_055467_010--Hb_000330_110 Hb_179061_010 Hb_179061_010 Hb_055467_010--Hb_179061_010 Hb_055467_010--Hb_001900_050 Hb_000152_470--Hb_000330_110 Hb_000152_470--Hb_179061_010 Hb_004093_070 Hb_004093_070 Hb_000152_470--Hb_004093_070 Hb_000330_110--Hb_179061_010 Hb_000330_110--Hb_004093_070 Hb_001900_050--Hb_000275_030 Hb_003623_060 Hb_003623_060 Hb_001900_050--Hb_003623_060 Hb_000062_040 Hb_000062_040 Hb_001900_050--Hb_000062_040 Hb_000275_030--Hb_003623_060 Hb_000275_030--Hb_000062_040 Hb_002527_020 Hb_002527_020 Hb_000275_030--Hb_002527_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.130748 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.29169

CAGE analysis