Hb_003623_060

Information

Type -
Description -
Location Contig3623: 49582-53696
Sequence    

Annotation

kegg
ID rcu:RCOM_0078700
description hypothetical protein
nr
ID XP_002533484.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T5G5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0078700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37233: 51417-51718
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003623_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000062_040 0.0009129903 - - PREDICTED: uncharacterized protein LOC105766209 [Gossypium raimondii]
3 Hb_000275_030 0.0100614349 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001900_050 0.0136689904 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
5 Hb_002527_020 0.014914222 - - PREDICTED: F-box protein At1g30790-like [Jatropha curcas]
6 Hb_002857_010 0.0164330625 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
7 Hb_043346_010 0.0186454186 - - PREDICTED: uncharacterized protein LOC105761922 [Gossypium raimondii]
8 Hb_001695_050 0.0215696761 - - PREDICTED: uncharacterized protein LOC104884077 [Beta vulgaris subsp. vulgaris]
9 Hb_008493_010 0.0286447245 - - hypothetical protein JCGZ_10529 [Jatropha curcas]
10 Hb_004643_050 0.030796754 - - hypothetical protein B456_001G165500 [Gossypium raimondii]
11 Hb_003003_060 0.0331854969 - - -
12 Hb_055467_010 0.0419475706 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
13 Hb_000152_470 0.0509795641 - - -
14 Hb_000330_110 0.0524876663 - - -
15 Hb_159229_030 0.0633634978 - - hypothetical protein CISIN_1g0034891mg, partial [Citrus sinensis]
16 Hb_091378_010 0.064020497 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
17 Hb_179061_010 0.0648416026 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
18 Hb_002457_010 0.0652938896 - - polyprotein [Oryza australiensis]
19 Hb_160190_010 0.0664252812 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
20 Hb_004093_070 0.0730165726 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]

Gene co-expression network

sample Hb_003623_060 Hb_003623_060 Hb_000062_040 Hb_000062_040 Hb_003623_060--Hb_000062_040 Hb_000275_030 Hb_000275_030 Hb_003623_060--Hb_000275_030 Hb_001900_050 Hb_001900_050 Hb_003623_060--Hb_001900_050 Hb_002527_020 Hb_002527_020 Hb_003623_060--Hb_002527_020 Hb_002857_010 Hb_002857_010 Hb_003623_060--Hb_002857_010 Hb_043346_010 Hb_043346_010 Hb_003623_060--Hb_043346_010 Hb_000062_040--Hb_000275_030 Hb_000062_040--Hb_002527_020 Hb_000062_040--Hb_001900_050 Hb_000062_040--Hb_002857_010 Hb_000062_040--Hb_043346_010 Hb_000275_030--Hb_001900_050 Hb_004643_050 Hb_004643_050 Hb_000275_030--Hb_004643_050 Hb_003003_060 Hb_003003_060 Hb_000275_030--Hb_003003_060 Hb_000275_030--Hb_002527_020 Hb_001900_050--Hb_004643_050 Hb_001900_050--Hb_003003_060 Hb_055467_010 Hb_055467_010 Hb_001900_050--Hb_055467_010 Hb_002527_020--Hb_002857_010 Hb_002527_020--Hb_043346_010 Hb_001695_050 Hb_001695_050 Hb_002527_020--Hb_001695_050 Hb_008493_010 Hb_008493_010 Hb_002527_020--Hb_008493_010 Hb_002857_010--Hb_043346_010 Hb_002857_010--Hb_001695_050 Hb_002857_010--Hb_008493_010 Hb_043346_010--Hb_001695_050 Hb_043346_010--Hb_008493_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0682087 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.128821

CAGE analysis