Hb_002857_010

Information

Type -
Description -
Location Contig2857: 30913-33961
Sequence    

Annotation

kegg
ID pop:POPTR_0006s19500g
description POPTRDRAFT_762951; leucine-rich repeat transmembrane protein kinase
nr
ID XP_002309364.2
description leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
swissprot
ID Q9ZUI0
description Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana GN=At2g24130 PE=3 SV=1
trembl
ID B9HB50
description Leucine-rich repeat transmembrane protein kinase OS=Populus trichocarpa GN=POPTR_0006s19500g PE=3 SV=2
Gene Ontology
ID GO:0004672
description leucine-rich repeat receptor-like serine threonine-protein kinase at2g24130

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002857_010 0.0 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
2 Hb_002527_020 0.0015189922 - - PREDICTED: F-box protein At1g30790-like [Jatropha curcas]
3 Hb_043346_010 0.0022126314 - - PREDICTED: uncharacterized protein LOC105761922 [Gossypium raimondii]
4 Hb_001695_050 0.0051373513 - - PREDICTED: uncharacterized protein LOC104884077 [Beta vulgaris subsp. vulgaris]
5 Hb_008493_010 0.0122139775 - - hypothetical protein JCGZ_10529 [Jatropha curcas]
6 Hb_000062_040 0.0155201683 - - PREDICTED: uncharacterized protein LOC105766209 [Gossypium raimondii]
7 Hb_003623_060 0.0164330625 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000275_030 0.0264926727 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001900_050 0.0300992271 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
10 Hb_159229_030 0.0469495884 - - hypothetical protein CISIN_1g0034891mg, partial [Citrus sinensis]
11 Hb_004643_050 0.0472196666 - - hypothetical protein B456_001G165500 [Gossypium raimondii]
12 Hb_091378_010 0.0476070475 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
13 Hb_002457_010 0.0488813459 - - polyprotein [Oryza australiensis]
14 Hb_003003_060 0.049607043 - - -
15 Hb_160190_010 0.0500135585 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
16 Hb_055467_010 0.0583633603 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
17 Hb_000152_470 0.0673881714 - - -
18 Hb_009423_020 0.0685523482 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_000330_110 0.0688949485 - - -
20 Hb_006351_100 0.0749911882 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]

Gene co-expression network

sample Hb_002857_010 Hb_002857_010 Hb_002527_020 Hb_002527_020 Hb_002857_010--Hb_002527_020 Hb_043346_010 Hb_043346_010 Hb_002857_010--Hb_043346_010 Hb_001695_050 Hb_001695_050 Hb_002857_010--Hb_001695_050 Hb_008493_010 Hb_008493_010 Hb_002857_010--Hb_008493_010 Hb_000062_040 Hb_000062_040 Hb_002857_010--Hb_000062_040 Hb_003623_060 Hb_003623_060 Hb_002857_010--Hb_003623_060 Hb_002527_020--Hb_043346_010 Hb_002527_020--Hb_001695_050 Hb_002527_020--Hb_008493_010 Hb_002527_020--Hb_000062_040 Hb_002527_020--Hb_003623_060 Hb_043346_010--Hb_001695_050 Hb_043346_010--Hb_008493_010 Hb_043346_010--Hb_000062_040 Hb_043346_010--Hb_003623_060 Hb_001695_050--Hb_008493_010 Hb_001695_050--Hb_000062_040 Hb_001695_050--Hb_003623_060 Hb_008493_010--Hb_000062_040 Hb_008493_010--Hb_003623_060 Hb_000062_040--Hb_003623_060 Hb_000275_030 Hb_000275_030 Hb_000062_040--Hb_000275_030 Hb_001900_050 Hb_001900_050 Hb_000062_040--Hb_001900_050 Hb_003623_060--Hb_000275_030 Hb_003623_060--Hb_001900_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0141556 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0246581

CAGE analysis