Hb_001900_050

Information

Type -
Description -
Location Contig1900: 76661-81718
Sequence    

Annotation

kegg
ID cit:102609547
description uncharacterized LOC102609547
nr
ID XP_006471576.1
description PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
swissprot
ID -
description -
trembl
ID W5AH38
description Uncharacterized protein OS=Triticum aestivum PE=4 SV=1
Gene Ontology
ID GO:0004553
description neutral alpha-glucosidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001900_050 0.0 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
2 Hb_000275_030 0.0036077681 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003623_060 0.0136689904 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000062_040 0.0145819035 - - PREDICTED: uncharacterized protein LOC105766209 [Gossypium raimondii]
5 Hb_004643_050 0.017130919 - - hypothetical protein B456_001G165500 [Gossypium raimondii]
6 Hb_003003_060 0.0195203905 - - -
7 Hb_055467_010 0.0282857588 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
8 Hb_002527_020 0.0285807738 - - PREDICTED: F-box protein At1g30790-like [Jatropha curcas]
9 Hb_002857_010 0.0300992271 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
10 Hb_043346_010 0.0323109742 - - PREDICTED: uncharacterized protein LOC105761922 [Gossypium raimondii]
11 Hb_001695_050 0.035234345 - - PREDICTED: uncharacterized protein LOC104884077 [Beta vulgaris subsp. vulgaris]
12 Hb_000152_470 0.0373221947 - - -
13 Hb_000330_110 0.0388311444 - - -
14 Hb_008493_010 0.0423068679 - - hypothetical protein JCGZ_10529 [Jatropha curcas]
15 Hb_179061_010 0.0511931902 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
16 Hb_004093_070 0.0593746993 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
17 Hb_100648_020 0.0614346287 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
18 Hb_153625_010 0.0678564437 - - PREDICTED: 21 kDa protein [Populus euphratica]
19 Hb_002112_030 0.0741611985 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
20 Hb_030370_080 0.0750601935 - - hypothetical protein SELMODRAFT_100988 [Selaginella moellendorffii]

Gene co-expression network

sample Hb_001900_050 Hb_001900_050 Hb_000275_030 Hb_000275_030 Hb_001900_050--Hb_000275_030 Hb_003623_060 Hb_003623_060 Hb_001900_050--Hb_003623_060 Hb_000062_040 Hb_000062_040 Hb_001900_050--Hb_000062_040 Hb_004643_050 Hb_004643_050 Hb_001900_050--Hb_004643_050 Hb_003003_060 Hb_003003_060 Hb_001900_050--Hb_003003_060 Hb_055467_010 Hb_055467_010 Hb_001900_050--Hb_055467_010 Hb_000275_030--Hb_003623_060 Hb_000275_030--Hb_000062_040 Hb_000275_030--Hb_004643_050 Hb_000275_030--Hb_003003_060 Hb_002527_020 Hb_002527_020 Hb_000275_030--Hb_002527_020 Hb_003623_060--Hb_000062_040 Hb_003623_060--Hb_002527_020 Hb_002857_010 Hb_002857_010 Hb_003623_060--Hb_002857_010 Hb_043346_010 Hb_043346_010 Hb_003623_060--Hb_043346_010 Hb_000062_040--Hb_002527_020 Hb_000062_040--Hb_002857_010 Hb_000062_040--Hb_043346_010 Hb_004643_050--Hb_003003_060 Hb_004643_050--Hb_055467_010 Hb_000152_470 Hb_000152_470 Hb_004643_050--Hb_000152_470 Hb_000330_110 Hb_000330_110 Hb_004643_050--Hb_000330_110 Hb_003003_060--Hb_055467_010 Hb_003003_060--Hb_000152_470 Hb_003003_060--Hb_000330_110 Hb_055467_010--Hb_000152_470 Hb_055467_010--Hb_000330_110 Hb_179061_010 Hb_179061_010 Hb_055467_010--Hb_179061_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.115968 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.234438

CAGE analysis