Hb_002112_030

Information

Type -
Description -
Location Contig2112: 60945-61870
Sequence    

Annotation

kegg
ID rcu:RCOM_0342250
description Alpha-expansin 1 precursor, putative
nr
ID XP_002523388.1
description Alpha-expansin 1 precursor, putative [Ricinus communis]
swissprot
ID Q9C554
description Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1
trembl
ID B9SBL9
description Alpha-expansin 1, putative OS=Ricinus communis GN=RCOM_0342250 PE=3 SV=1
Gene Ontology
ID GO:0005576
description expansin-a15-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002112_030 0.0 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
2 Hb_030370_080 0.0009015969 - - hypothetical protein SELMODRAFT_100988 [Selaginella moellendorffii]
3 Hb_153625_010 0.006321093 - - PREDICTED: 21 kDa protein [Populus euphratica]
4 Hb_100648_020 0.012756175 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
5 Hb_004093_070 0.0148196528 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
6 Hb_032050_030 0.0157694552 - - C, putative [Ricinus communis]
7 Hb_179061_010 0.0230119371 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
8 Hb_000152_400 0.0254663988 - - PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]
9 Hb_020332_020 0.0277326369 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
10 Hb_000330_110 0.0353804996 - - -
11 Hb_000152_470 0.0368894627 - - -
12 Hb_000202_110 0.0433681173 - - PREDICTED: uncharacterized protein LOC103948916 [Pyrus x bretschneideri]
13 Hb_003060_130 0.0438497098 - - PREDICTED: protein P21-like [Jatropha curcas]
14 Hb_055467_010 0.0459225213 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
15 Hb_003003_060 0.0546790875 - - -
16 Hb_004643_050 0.057065239 - - hypothetical protein B456_001G165500 [Gossypium raimondii]
17 Hb_001148_010 0.0595893069 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
18 Hb_003653_040 0.062737043 - - hypothetical protein SORBIDRAFT_05g024215 [Sorghum bicolor]
19 Hb_135174_010 0.0673092865 - - Glycosyl hydrolase family protein 43 isoform 2 [Theobroma cacao]
20 Hb_004528_030 0.0673338668 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]

Gene co-expression network

sample Hb_002112_030 Hb_002112_030 Hb_030370_080 Hb_030370_080 Hb_002112_030--Hb_030370_080 Hb_153625_010 Hb_153625_010 Hb_002112_030--Hb_153625_010 Hb_100648_020 Hb_100648_020 Hb_002112_030--Hb_100648_020 Hb_004093_070 Hb_004093_070 Hb_002112_030--Hb_004093_070 Hb_032050_030 Hb_032050_030 Hb_002112_030--Hb_032050_030 Hb_179061_010 Hb_179061_010 Hb_002112_030--Hb_179061_010 Hb_030370_080--Hb_153625_010 Hb_030370_080--Hb_100648_020 Hb_030370_080--Hb_032050_030 Hb_030370_080--Hb_004093_070 Hb_030370_080--Hb_179061_010 Hb_153625_010--Hb_100648_020 Hb_153625_010--Hb_004093_070 Hb_153625_010--Hb_179061_010 Hb_153625_010--Hb_032050_030 Hb_100648_020--Hb_004093_070 Hb_100648_020--Hb_179061_010 Hb_000330_110 Hb_000330_110 Hb_100648_020--Hb_000330_110 Hb_004093_070--Hb_179061_010 Hb_004093_070--Hb_000330_110 Hb_000152_400 Hb_000152_400 Hb_032050_030--Hb_000152_400 Hb_020332_020 Hb_020332_020 Hb_032050_030--Hb_020332_020 Hb_000202_110 Hb_000202_110 Hb_032050_030--Hb_000202_110 Hb_179061_010--Hb_000330_110 Hb_000152_470 Hb_000152_470 Hb_179061_010--Hb_000152_470 Hb_055467_010 Hb_055467_010 Hb_179061_010--Hb_055467_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.116985 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.347801

CAGE analysis