Hb_000758_060

Information

Type -
Description -
Location Contig758: 43432-45373
Sequence    

Annotation

kegg
ID pop:POPTR_0011s06040g
description GDSL-motif lipase/hydrolase family protein
nr
ID XP_012091702.1
description PREDICTED: GDSL esterase/lipase At5g45960 [Jatropha curcas]
swissprot
ID Q9FJ40
description GDSL esterase/lipase At5g45960 OS=Arabidopsis thaliana GN=At5g45960 PE=2 SV=1
trembl
ID B9N9M6
description GDSL-motif lipase/hydrolase family protein OS=Populus trichocarpa GN=POPTR_0011s06040g PE=4 SV=1
Gene Ontology
ID GO:0016635
description gdsl esterase lipase at5g45960-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57156: 44542-45228 , PASA_asmbl_57157: 44643-45308
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000758_060 0.0 - - PREDICTED: GDSL esterase/lipase At5g45960 [Jatropha curcas]
2 Hb_000043_060 0.0601675118 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 35 [Jatropha curcas]
3 Hb_002294_020 0.0845491083 - - PREDICTED: uncharacterized protein LOC105629874 [Jatropha curcas]
4 Hb_004466_080 0.0889438126 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
5 Hb_025654_010 0.0896610612 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
6 Hb_011540_050 0.0898686436 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_187301_010 0.0899119546 - - PREDICTED: uncharacterized protein LOC105629082 [Jatropha curcas]
8 Hb_009004_020 0.090224945 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
9 Hb_000088_280 0.0904916613 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
10 Hb_003370_040 0.0914032314 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
11 Hb_001681_010 0.0914258381 - - PREDICTED: cytochrome P450 81E8-like isoform X1 [Populus euphratica]
12 Hb_001192_020 0.0918125168 - - -
13 Hb_184398_010 0.0923762027 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
14 Hb_020956_050 0.0951903316 - - PREDICTED: uncharacterized protein LOC102670328 [Glycine max]
15 Hb_008021_030 0.0962965881 - - short-chain dehydrogenase, putative [Ricinus communis]
16 Hb_001140_310 0.0966671396 - - hypothetical protein AMTR_s00025p00025050 [Amborella trichopoda]
17 Hb_004528_030 0.0966688032 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
18 Hb_135174_010 0.0966784311 - - Glycosyl hydrolase family protein 43 isoform 2 [Theobroma cacao]
19 Hb_003653_040 0.0985584092 - - hypothetical protein SORBIDRAFT_05g024215 [Sorghum bicolor]
20 Hb_004113_030 0.0997602091 - - -

Gene co-expression network

sample Hb_000758_060 Hb_000758_060 Hb_000043_060 Hb_000043_060 Hb_000758_060--Hb_000043_060 Hb_002294_020 Hb_002294_020 Hb_000758_060--Hb_002294_020 Hb_004466_080 Hb_004466_080 Hb_000758_060--Hb_004466_080 Hb_025654_010 Hb_025654_010 Hb_000758_060--Hb_025654_010 Hb_011540_050 Hb_011540_050 Hb_000758_060--Hb_011540_050 Hb_187301_010 Hb_187301_010 Hb_000758_060--Hb_187301_010 Hb_000043_060--Hb_002294_020 Hb_000015_220 Hb_000015_220 Hb_000043_060--Hb_000015_220 Hb_004197_030 Hb_004197_030 Hb_000043_060--Hb_004197_030 Hb_094074_010 Hb_094074_010 Hb_000043_060--Hb_094074_010 Hb_004113_030 Hb_004113_030 Hb_000043_060--Hb_004113_030 Hb_001081_070 Hb_001081_070 Hb_002294_020--Hb_001081_070 Hb_002294_020--Hb_004113_030 Hb_001681_010 Hb_001681_010 Hb_002294_020--Hb_001681_010 Hb_184398_010 Hb_184398_010 Hb_002294_020--Hb_184398_010 Hb_004466_080--Hb_025654_010 Hb_004466_080--Hb_011540_050 Hb_004466_080--Hb_187301_010 Hb_004466_080--Hb_001681_010 Hb_000088_280 Hb_000088_280 Hb_004466_080--Hb_000088_280 Hb_004466_080--Hb_184398_010 Hb_025654_010--Hb_011540_050 Hb_025654_010--Hb_187301_010 Hb_025654_010--Hb_000088_280 Hb_003370_040 Hb_003370_040 Hb_025654_010--Hb_003370_040 Hb_001192_020 Hb_001192_020 Hb_025654_010--Hb_001192_020 Hb_011540_050--Hb_187301_010 Hb_011540_050--Hb_000088_280 Hb_011540_050--Hb_003370_040 Hb_011540_050--Hb_001192_020 Hb_187301_010--Hb_000088_280 Hb_187301_010--Hb_003370_040 Hb_187301_010--Hb_001192_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.81143 0.940009 26.5711 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0297493 0 0 147.553

CAGE analysis