Hb_004197_030

Information

Type -
Description -
Location Contig4197: 54117-54410
Sequence    

Annotation

kegg
ID pop:POPTR_0125s00200g
description hypothetical protein
nr
ID KDP44430.1
description hypothetical protein JCGZ_16263 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LII8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16263 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41447: 54056-54644
cDNA
(Sanger)
(ID:Location)		 006_G24.ab1: 54056-54644

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004197_030 0.0 - - hypothetical protein JCGZ_16263 [Jatropha curcas]
2 Hb_000940_120 0.0382297808 - - PREDICTED: proline-rich protein 4-like isoform X2 [Pyrus x bretschneideri]
3 Hb_002042_220 0.0387822111 - - Kinesin heavy chain, putative [Ricinus communis]
4 Hb_094074_010 0.0549660112 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
5 Hb_003058_150 0.0666878125 - - PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Jatropha curcas]
6 Hb_005474_070 0.06739594 - - hypothetical protein JCGZ_10579 [Jatropha curcas]
7 Hb_000007_290 0.0722015516 - - hypothetical protein AALP_AAs43195U000200 [Arabis alpina]
8 Hb_002010_040 0.074983128 - - -
9 Hb_002960_180 0.0769095774 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
10 Hb_003647_070 0.0794127927 - - hypothetical protein POPTR_0006s09430g [Populus trichocarpa]
11 Hb_000015_220 0.0804849263 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
12 Hb_000043_060 0.0814668772 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 35 [Jatropha curcas]
13 Hb_001140_110 0.0852726065 - - hypothetical protein JCGZ_26123 [Jatropha curcas]
14 Hb_002294_020 0.0883011777 - - PREDICTED: uncharacterized protein LOC105629874 [Jatropha curcas]
15 Hb_002445_020 0.0909344718 - - -
16 Hb_001051_020 0.0912129568 - - hypothetical protein L484_008044 [Morus notabilis]
17 Hb_002600_110 0.0917107561 - - hypothetical protein POPTR_0004s10540g [Populus trichocarpa]
18 Hb_034299_010 0.0932642729 - - F-box and wd40 domain protein, putative [Ricinus communis]
19 Hb_012049_010 0.0934580231 - - hypothetical protein B456_002G055100 [Gossypium raimondii]
20 Hb_004329_030 0.0953550265 - - hypothetical protein JCGZ_17335 [Jatropha curcas]

Gene co-expression network

sample Hb_004197_030 Hb_004197_030 Hb_000940_120 Hb_000940_120 Hb_004197_030--Hb_000940_120 Hb_002042_220 Hb_002042_220 Hb_004197_030--Hb_002042_220 Hb_094074_010 Hb_094074_010 Hb_004197_030--Hb_094074_010 Hb_003058_150 Hb_003058_150 Hb_004197_030--Hb_003058_150 Hb_005474_070 Hb_005474_070 Hb_004197_030--Hb_005474_070 Hb_000007_290 Hb_000007_290 Hb_004197_030--Hb_000007_290 Hb_000940_120--Hb_003058_150 Hb_000940_120--Hb_002042_220 Hb_001140_110 Hb_001140_110 Hb_000940_120--Hb_001140_110 Hb_000940_120--Hb_005474_070 Hb_003647_070 Hb_003647_070 Hb_000940_120--Hb_003647_070 Hb_002042_220--Hb_000007_290 Hb_002042_220--Hb_005474_070 Hb_002010_040 Hb_002010_040 Hb_002042_220--Hb_002010_040 Hb_002042_220--Hb_003647_070 Hb_002960_180 Hb_002960_180 Hb_094074_010--Hb_002960_180 Hb_094074_010--Hb_002042_220 Hb_002929_040 Hb_002929_040 Hb_094074_010--Hb_002929_040 Hb_034299_010 Hb_034299_010 Hb_094074_010--Hb_034299_010 Hb_099263_010 Hb_099263_010 Hb_094074_010--Hb_099263_010 Hb_003058_150--Hb_005474_070 Hb_003805_110 Hb_003805_110 Hb_003058_150--Hb_003805_110 Hb_003058_150--Hb_001140_110 Hb_003058_150--Hb_003647_070 Hb_007534_080 Hb_007534_080 Hb_003058_150--Hb_007534_080 Hb_005474_070--Hb_003647_070 Hb_005474_070--Hb_002010_040 Hb_005474_070--Hb_000007_290 Hb_005474_070--Hb_007534_080 Hb_000007_290--Hb_002010_040 Hb_000007_290--Hb_003647_070 Hb_045260_010 Hb_045260_010 Hb_000007_290--Hb_045260_010 Hb_000007_290--Hb_099263_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 33.9249 146.28 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 652.014

CAGE analysis