Hb_007534_080

Information

Type -
Description -
Location Contig7534: 76096-81247
Sequence    

Annotation

kegg
ID rcu:RCOM_1556820
description d-3-phosphoglycerate dehydrogenase, putative (EC:1.1.1.95)
nr
ID XP_002525010.1
description d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis]
swissprot
ID O04130
description D-3-phosphoglycerate dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=PGDH2 PE=1 SV=2
trembl
ID B9SG91
description D-3-phosphoglycerate dehydrogenase, putative OS=Ricinus communis GN=RCOM_1556820 PE=3 SV=1
Gene Ontology
ID GO:0004617
description d-3-phosphoglycerate dehydrogenase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007534_080 0.0 - - d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis]
2 Hb_005474_070 0.0431335609 - - hypothetical protein JCGZ_10579 [Jatropha curcas]
3 Hb_003647_070 0.0458954849 - - hypothetical protein POPTR_0006s09430g [Populus trichocarpa]
4 Hb_003058_150 0.0486573479 - - PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Jatropha curcas]
5 Hb_001097_110 0.0501340981 - - gibberellin 20-oxidase, putative [Ricinus communis]
6 Hb_000140_040 0.0515248167 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
7 Hb_003805_110 0.0529943046 - - PREDICTED: laccase-11-like [Jatropha curcas]
8 Hb_001140_110 0.0545243226 - - hypothetical protein JCGZ_26123 [Jatropha curcas]
9 Hb_002010_040 0.0554279994 - - -
10 Hb_000007_290 0.0583302663 - - hypothetical protein AALP_AAs43195U000200 [Arabis alpina]
11 Hb_045260_010 0.0664238148 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
12 Hb_000363_070 0.0670993652 - - conserved hypothetical protein [Ricinus communis]
13 Hb_077976_010 0.068093558 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
14 Hb_001951_050 0.0684004797 - - chlorophyll A/B binding protein, putative [Ricinus communis]
15 Hb_002042_220 0.069648206 - - Kinesin heavy chain, putative [Ricinus communis]
16 Hb_029584_020 0.0709379786 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000815_120 0.07572644 - - calcium ion binding protein, putative [Ricinus communis]
18 Hb_180094_010 0.0760128145 - - PREDICTED: uncharacterized protein LOC105628311 [Jatropha curcas]
19 Hb_000940_120 0.0761766921 - - PREDICTED: proline-rich protein 4-like isoform X2 [Pyrus x bretschneideri]
20 Hb_000152_300 0.078072867 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_007534_080 Hb_007534_080 Hb_005474_070 Hb_005474_070 Hb_007534_080--Hb_005474_070 Hb_003647_070 Hb_003647_070 Hb_007534_080--Hb_003647_070 Hb_003058_150 Hb_003058_150 Hb_007534_080--Hb_003058_150 Hb_001097_110 Hb_001097_110 Hb_007534_080--Hb_001097_110 Hb_000140_040 Hb_000140_040 Hb_007534_080--Hb_000140_040 Hb_003805_110 Hb_003805_110 Hb_007534_080--Hb_003805_110 Hb_005474_070--Hb_003647_070 Hb_005474_070--Hb_003058_150 Hb_002010_040 Hb_002010_040 Hb_005474_070--Hb_002010_040 Hb_000007_290 Hb_000007_290 Hb_005474_070--Hb_000007_290 Hb_002042_220 Hb_002042_220 Hb_005474_070--Hb_002042_220 Hb_003647_070--Hb_002010_040 Hb_003647_070--Hb_000007_290 Hb_045260_010 Hb_045260_010 Hb_003647_070--Hb_045260_010 Hb_003647_070--Hb_002042_220 Hb_003058_150--Hb_003805_110 Hb_001140_110 Hb_001140_110 Hb_003058_150--Hb_001140_110 Hb_000940_120 Hb_000940_120 Hb_003058_150--Hb_000940_120 Hb_003058_150--Hb_003647_070 Hb_001097_110--Hb_001140_110 Hb_001951_050 Hb_001951_050 Hb_001097_110--Hb_001951_050 Hb_001097_110--Hb_000140_040 Hb_001097_110--Hb_003805_110 Hb_001097_110--Hb_003058_150 Hb_180094_010 Hb_180094_010 Hb_000140_040--Hb_180094_010 Hb_127349_020 Hb_127349_020 Hb_000140_040--Hb_127349_020 Hb_000152_300 Hb_000152_300 Hb_000140_040--Hb_000152_300 Hb_046825_010 Hb_046825_010 Hb_000140_040--Hb_046825_010 Hb_029584_020 Hb_029584_020 Hb_003805_110--Hb_029584_020 Hb_000530_060 Hb_000530_060 Hb_003805_110--Hb_000530_060 Hb_003805_110--Hb_001140_110 Hb_081344_010 Hb_081344_010 Hb_003805_110--Hb_081344_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00852697 2.29372 4.5171 0.00805618 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0488895 18.2325

CAGE analysis