Hb_000940_120

Information

Type -
Description -
Location Contig940: 119551-120522
Sequence    

Annotation

kegg
ID pxb:103929018
description proline-rich protein 4-like
nr
ID XP_009354440.1
description PREDICTED: proline-rich protein 4-like isoform X2 [Pyrus x bretschneideri]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000940_120 0.0 - - PREDICTED: proline-rich protein 4-like isoform X2 [Pyrus x bretschneideri]
2 Hb_004197_030 0.0382297808 - - hypothetical protein JCGZ_16263 [Jatropha curcas]
3 Hb_003058_150 0.0400428371 - - PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Jatropha curcas]
4 Hb_002042_220 0.0474985071 - - Kinesin heavy chain, putative [Ricinus communis]
5 Hb_001140_110 0.0531059126 - - hypothetical protein JCGZ_26123 [Jatropha curcas]
6 Hb_005474_070 0.0539071186 - - hypothetical protein JCGZ_10579 [Jatropha curcas]
7 Hb_003647_070 0.0718489144 - - hypothetical protein POPTR_0006s09430g [Populus trichocarpa]
8 Hb_000504_220 0.0723656838 - - hypothetical protein JCGZ_10249 [Jatropha curcas]
9 Hb_003805_110 0.0731316803 - - PREDICTED: laccase-11-like [Jatropha curcas]
10 Hb_000007_290 0.0732694977 - - hypothetical protein AALP_AAs43195U000200 [Arabis alpina]
11 Hb_183479_030 0.0736371848 - - Photosystem I reaction center subunit V, chloroplast precursor, putative [Ricinus communis]
12 Hb_002010_040 0.0740364992 - - -
13 Hb_001080_290 0.0754353726 - - PSI reaction center subunit II [Citrus sinensis]
14 Hb_007534_080 0.0761766921 - - d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis]
15 Hb_001097_110 0.0788191957 - - gibberellin 20-oxidase, putative [Ricinus communis]
16 Hb_001951_050 0.0790395207 - - chlorophyll A/B binding protein, putative [Ricinus communis]
17 Hb_002600_110 0.0799675673 - - hypothetical protein POPTR_0004s10540g [Populus trichocarpa]
18 Hb_042123_010 0.0814685704 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Populus euphratica]
19 Hb_077976_010 0.0829444612 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
20 Hb_094074_010 0.0899794557 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]

Gene co-expression network

sample Hb_000940_120 Hb_000940_120 Hb_004197_030 Hb_004197_030 Hb_000940_120--Hb_004197_030 Hb_003058_150 Hb_003058_150 Hb_000940_120--Hb_003058_150 Hb_002042_220 Hb_002042_220 Hb_000940_120--Hb_002042_220 Hb_001140_110 Hb_001140_110 Hb_000940_120--Hb_001140_110 Hb_005474_070 Hb_005474_070 Hb_000940_120--Hb_005474_070 Hb_003647_070 Hb_003647_070 Hb_000940_120--Hb_003647_070 Hb_004197_030--Hb_002042_220 Hb_094074_010 Hb_094074_010 Hb_004197_030--Hb_094074_010 Hb_004197_030--Hb_003058_150 Hb_004197_030--Hb_005474_070 Hb_000007_290 Hb_000007_290 Hb_004197_030--Hb_000007_290 Hb_003058_150--Hb_005474_070 Hb_003805_110 Hb_003805_110 Hb_003058_150--Hb_003805_110 Hb_003058_150--Hb_001140_110 Hb_003058_150--Hb_003647_070 Hb_007534_080 Hb_007534_080 Hb_003058_150--Hb_007534_080 Hb_002042_220--Hb_000007_290 Hb_002042_220--Hb_005474_070 Hb_002010_040 Hb_002010_040 Hb_002042_220--Hb_002010_040 Hb_002042_220--Hb_003647_070 Hb_001951_050 Hb_001951_050 Hb_001140_110--Hb_001951_050 Hb_001097_110 Hb_001097_110 Hb_001140_110--Hb_001097_110 Hb_001140_110--Hb_003805_110 Hb_001080_290 Hb_001080_290 Hb_001140_110--Hb_001080_290 Hb_005474_070--Hb_003647_070 Hb_005474_070--Hb_002010_040 Hb_005474_070--Hb_000007_290 Hb_005474_070--Hb_007534_080 Hb_003647_070--Hb_002010_040 Hb_003647_070--Hb_000007_290 Hb_045260_010 Hb_045260_010 Hb_003647_070--Hb_045260_010 Hb_003647_070--Hb_007534_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.78395 554.765 1537.02 0 0.204493
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.34899 7839.87

CAGE analysis