Hb_034299_010

Information

Type -
Description -
Location Contig34299: 5726-7018
Sequence    

Annotation

kegg
ID rcu:RCOM_0699870
description F-box and wd40 domain protein, putative (EC:2.7.11.7)
nr
ID XP_002520212.1
description F-box and wd40 domain protein, putative [Ricinus communis]
swissprot
ID Q8YRI1
description Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=3 SV=1
trembl
ID B9S2J3
description F-box and wd40 domain protein, putative OS=Ricinus communis GN=RCOM_0699870 PE=4 SV=1
Gene Ontology
ID GO:0016905
description vegetative incompatibility protein het-e-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35806: 6242-6605
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034299_010 0.0 - - F-box and wd40 domain protein, putative [Ricinus communis]
2 Hb_001051_020 0.0418536904 - - hypothetical protein L484_008044 [Morus notabilis]
3 Hb_004329_030 0.0587600295 - - hypothetical protein JCGZ_17335 [Jatropha curcas]
4 Hb_099263_010 0.0615019624 - - hypothetical protein AALP_AAs50029U000400 [Arabis alpina]
5 Hb_002960_180 0.065433354 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
6 Hb_000007_290 0.0691917509 - - hypothetical protein AALP_AAs43195U000200 [Arabis alpina]
7 Hb_002010_040 0.0717197486 - - -
8 Hb_002042_220 0.0729004229 - - Kinesin heavy chain, putative [Ricinus communis]
9 Hb_005991_030 0.0770412987 - - copper ion binding protein, putative [Ricinus communis]
10 Hb_094074_010 0.077474978 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
11 Hb_002675_220 0.08010126 - - PREDICTED: probable pyridoxal biosynthesis protein PDX1.2 [Populus euphratica]
12 Hb_003647_070 0.0812780042 - - hypothetical protein POPTR_0006s09430g [Populus trichocarpa]
13 Hb_002250_040 0.0858902744 - - PREDICTED: transcription repressor OFP17 [Jatropha curcas]
14 Hb_045260_010 0.0865007275 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
15 Hb_005474_070 0.0883241831 - - hypothetical protein JCGZ_10579 [Jatropha curcas]
16 Hb_011108_010 0.0899653376 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103335582 [Prunus mume]
17 Hb_004197_030 0.0932642729 - - hypothetical protein JCGZ_16263 [Jatropha curcas]
18 Hb_007534_080 0.0934346237 - - d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis]
19 Hb_002929_040 0.0935335649 - - zinc finger protein, putative [Ricinus communis]
20 Hb_000540_080 0.0955552552 - - PREDICTED: laccase-17 [Jatropha curcas]

Gene co-expression network

sample Hb_034299_010 Hb_034299_010 Hb_001051_020 Hb_001051_020 Hb_034299_010--Hb_001051_020 Hb_004329_030 Hb_004329_030 Hb_034299_010--Hb_004329_030 Hb_099263_010 Hb_099263_010 Hb_034299_010--Hb_099263_010 Hb_002960_180 Hb_002960_180 Hb_034299_010--Hb_002960_180 Hb_000007_290 Hb_000007_290 Hb_034299_010--Hb_000007_290 Hb_002010_040 Hb_002010_040 Hb_034299_010--Hb_002010_040 Hb_001051_020--Hb_004329_030 Hb_002042_220 Hb_002042_220 Hb_001051_020--Hb_002042_220 Hb_001051_020--Hb_000007_290 Hb_001051_020--Hb_002010_040 Hb_002081_140 Hb_002081_140 Hb_001051_020--Hb_002081_140 Hb_004329_030--Hb_002081_140 Hb_004329_030--Hb_002960_180 Hb_094074_010 Hb_094074_010 Hb_004329_030--Hb_094074_010 Hb_002929_040 Hb_002929_040 Hb_004329_030--Hb_002929_040 Hb_005991_030 Hb_005991_030 Hb_099263_010--Hb_005991_030 Hb_011108_010 Hb_011108_010 Hb_099263_010--Hb_011108_010 Hb_099263_010--Hb_000007_290 Hb_099263_010--Hb_002010_040 Hb_045260_010 Hb_045260_010 Hb_099263_010--Hb_045260_010 Hb_099263_010--Hb_002960_180 Hb_002960_180--Hb_094074_010 Hb_002960_180--Hb_002929_040 Hb_002960_180--Hb_002042_220 Hb_002960_180--Hb_005991_030 Hb_000007_290--Hb_002010_040 Hb_003647_070 Hb_003647_070 Hb_000007_290--Hb_003647_070 Hb_005474_070 Hb_005474_070 Hb_000007_290--Hb_005474_070 Hb_000007_290--Hb_002042_220 Hb_000007_290--Hb_045260_010 Hb_002010_040--Hb_003647_070 Hb_002010_040--Hb_005474_070 Hb_002010_040--Hb_002042_220 Hb_002010_040--Hb_045260_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.389614 1.85151 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0467379 5.401

CAGE analysis