Hb_002081_140

Information

Type -
Description -
Location Contig2081: 229604-230993
Sequence    

Annotation

kegg
ID rcu:RCOM_1383960
description hypothetical protein
nr
ID XP_002522138.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID B9S822
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1383960 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002081_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004329_030 0.0729904201 - - hypothetical protein JCGZ_17335 [Jatropha curcas]
3 Hb_001051_020 0.0855304603 - - hypothetical protein L484_008044 [Morus notabilis]
4 Hb_000997_370 0.0875659436 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Jatropha curcas]
5 Hb_002675_220 0.0938180534 - - PREDICTED: probable pyridoxal biosynthesis protein PDX1.2 [Populus euphratica]
6 Hb_003253_030 0.0951029993 - - lysosomal pro-X carboxypeptidase, putative [Ricinus communis]
7 Hb_034299_010 0.0982403128 - - F-box and wd40 domain protein, putative [Ricinus communis]
8 Hb_080048_030 0.1029407175 desease resistance Gene Name: NB-ARC Leucine-rich repeat containing protein [Theobroma cacao]
9 Hb_001104_070 0.1077525711 - - hypothetical protein SORBIDRAFT_10g024640 [Sorghum bicolor]
10 Hb_169492_010 0.1124350312 - - PREDICTED: expansin-like B1 [Jatropha curcas]
11 Hb_002250_040 0.1131940122 - - PREDICTED: transcription repressor OFP17 [Jatropha curcas]
12 Hb_000844_060 0.1169986865 - - PREDICTED: uncharacterized protein LOC105633706 [Jatropha curcas]
13 Hb_011214_080 0.1177450134 - - sucrose synthase 1 [Hevea brasiliensis]
14 Hb_018487_040 0.1207520566 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
15 Hb_002960_180 0.1231171417 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
16 Hb_000538_110 0.1239874376 - - sucrose synthase 1 [Hevea brasiliensis]
17 Hb_000155_230 0.1253198743 - - rac gtpase, putative [Ricinus communis]
18 Hb_189208_080 0.1253955916 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 11-like isoform X1 [Jatropha curcas]
19 Hb_133076_010 0.1271032677 - - PREDICTED: scopoletin glucosyltransferase-like [Populus euphratica]
20 Hb_029386_010 0.128527443 - - RALF-LIKE 27 family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_002081_140 Hb_002081_140 Hb_004329_030 Hb_004329_030 Hb_002081_140--Hb_004329_030 Hb_001051_020 Hb_001051_020 Hb_002081_140--Hb_001051_020 Hb_000997_370 Hb_000997_370 Hb_002081_140--Hb_000997_370 Hb_002675_220 Hb_002675_220 Hb_002081_140--Hb_002675_220 Hb_003253_030 Hb_003253_030 Hb_002081_140--Hb_003253_030 Hb_034299_010 Hb_034299_010 Hb_002081_140--Hb_034299_010 Hb_004329_030--Hb_001051_020 Hb_004329_030--Hb_034299_010 Hb_002960_180 Hb_002960_180 Hb_004329_030--Hb_002960_180 Hb_094074_010 Hb_094074_010 Hb_004329_030--Hb_094074_010 Hb_002929_040 Hb_002929_040 Hb_004329_030--Hb_002929_040 Hb_001051_020--Hb_034299_010 Hb_002042_220 Hb_002042_220 Hb_001051_020--Hb_002042_220 Hb_000007_290 Hb_000007_290 Hb_001051_020--Hb_000007_290 Hb_002010_040 Hb_002010_040 Hb_001051_020--Hb_002010_040 Hb_000254_080 Hb_000254_080 Hb_000997_370--Hb_000254_080 Hb_002119_150 Hb_002119_150 Hb_000997_370--Hb_002119_150 Hb_004837_080 Hb_004837_080 Hb_000997_370--Hb_004837_080 Hb_000538_110 Hb_000538_110 Hb_000997_370--Hb_000538_110 Hb_029386_010 Hb_029386_010 Hb_000997_370--Hb_029386_010 Hb_002250_040 Hb_002250_040 Hb_002675_220--Hb_002250_040 Hb_001104_070 Hb_001104_070 Hb_002675_220--Hb_001104_070 Hb_018487_040 Hb_018487_040 Hb_002675_220--Hb_018487_040 Hb_189208_080 Hb_189208_080 Hb_002675_220--Hb_189208_080 Hb_080048_030 Hb_080048_030 Hb_002675_220--Hb_080048_030 Hb_005483_040 Hb_005483_040 Hb_002675_220--Hb_005483_040 Hb_000844_060 Hb_000844_060 Hb_003253_030--Hb_000844_060 Hb_003253_030--Hb_004329_030 Hb_003622_050 Hb_003622_050 Hb_003253_030--Hb_003622_050 Hb_001085_200 Hb_001085_200 Hb_003253_030--Hb_001085_200 Hb_002600_110 Hb_002600_110 Hb_003253_030--Hb_002600_110 Hb_099263_010 Hb_099263_010 Hb_034299_010--Hb_099263_010 Hb_034299_010--Hb_002960_180 Hb_034299_010--Hb_000007_290 Hb_034299_010--Hb_002010_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0258604 0.194342 0.920847 0 0.0159586
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.10069 2.85401

CAGE analysis