Hb_002929_040

Information

Type -
Description -
Location Contig2929: 30591-32423
Sequence    

Annotation

kegg
ID rcu:RCOM_1487310
description zinc finger protein, putative
nr
ID XP_002515932.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q9LU14
description GDSL esterase/lipase APG OS=Arabidopsis thaliana GN=APG PE=1 SV=1
trembl
ID B9RQB3
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1487310 PE=4 SV=1
Gene Ontology
ID GO:0048046
description gdsl esterase lipase apg

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30725: 30572-32376
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002929_040 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_002960_180 0.0566103665 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
3 Hb_094074_010 0.0613601568 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
4 Hb_004329_030 0.0882836421 - - hypothetical protein JCGZ_17335 [Jatropha curcas]
5 Hb_005991_030 0.0934120575 - - copper ion binding protein, putative [Ricinus communis]
6 Hb_034299_010 0.0935335649 - - F-box and wd40 domain protein, putative [Ricinus communis]
7 Hb_099263_010 0.1013628069 - - hypothetical protein AALP_AAs50029U000400 [Arabis alpina]
8 Hb_100648_020 0.1027201366 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
9 Hb_004093_070 0.1027328303 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
10 Hb_000043_060 0.1029040635 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 35 [Jatropha curcas]
11 Hb_153625_010 0.102943727 - - PREDICTED: 21 kDa protein [Populus euphratica]
12 Hb_179061_010 0.1031869293 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
13 Hb_002112_030 0.103548827 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
14 Hb_030370_080 0.1036659224 - - hypothetical protein SELMODRAFT_100988 [Selaginella moellendorffii]
15 Hb_000330_110 0.105073623 - - -
16 Hb_000152_470 0.1053998912 - - -
17 Hb_001105_150 0.1064577346 - - GERMIN-LIKE protein 10 [Populus trichocarpa]
18 Hb_032050_030 0.1066706997 - - C, putative [Ricinus communis]
19 Hb_055467_010 0.1077707127 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
20 Hb_000015_220 0.1079470432 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]

Gene co-expression network

sample Hb_002929_040 Hb_002929_040 Hb_002960_180 Hb_002960_180 Hb_002929_040--Hb_002960_180 Hb_094074_010 Hb_094074_010 Hb_002929_040--Hb_094074_010 Hb_004329_030 Hb_004329_030 Hb_002929_040--Hb_004329_030 Hb_005991_030 Hb_005991_030 Hb_002929_040--Hb_005991_030 Hb_034299_010 Hb_034299_010 Hb_002929_040--Hb_034299_010 Hb_099263_010 Hb_099263_010 Hb_002929_040--Hb_099263_010 Hb_002960_180--Hb_094074_010 Hb_002960_180--Hb_099263_010 Hb_002960_180--Hb_034299_010 Hb_002042_220 Hb_002042_220 Hb_002960_180--Hb_002042_220 Hb_002960_180--Hb_005991_030 Hb_004197_030 Hb_004197_030 Hb_094074_010--Hb_004197_030 Hb_094074_010--Hb_002042_220 Hb_094074_010--Hb_034299_010 Hb_094074_010--Hb_099263_010 Hb_001051_020 Hb_001051_020 Hb_004329_030--Hb_001051_020 Hb_004329_030--Hb_034299_010 Hb_002081_140 Hb_002081_140 Hb_004329_030--Hb_002081_140 Hb_004329_030--Hb_002960_180 Hb_004329_030--Hb_094074_010 Hb_011108_010 Hb_011108_010 Hb_005991_030--Hb_011108_010 Hb_005991_030--Hb_099263_010 Hb_135887_010 Hb_135887_010 Hb_005991_030--Hb_135887_010 Hb_005228_050 Hb_005228_050 Hb_005991_030--Hb_005228_050 Hb_000724_040 Hb_000724_040 Hb_005991_030--Hb_000724_040 Hb_034299_010--Hb_001051_020 Hb_034299_010--Hb_099263_010 Hb_000007_290 Hb_000007_290 Hb_034299_010--Hb_000007_290 Hb_002010_040 Hb_002010_040 Hb_034299_010--Hb_002010_040 Hb_099263_010--Hb_011108_010 Hb_099263_010--Hb_000007_290 Hb_099263_010--Hb_002010_040 Hb_045260_010 Hb_045260_010 Hb_099263_010--Hb_045260_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.115557 0.764231 11.3666 165.883 0 0.100223
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.16461 0.1554 0.0485731 0.662074 459.496

CAGE analysis