Hb_002960_180

Information

Type -
Description -
Location Contig2960: 153073-155602
Sequence    

Annotation

kegg
ID pop:POPTR_0002s02030g
description POPTRDRAFT_550852; family II extracellular lipase 3 family protein
nr
ID XP_012073753.1
description PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
swissprot
ID Q94CH6
description GDSL esterase/lipase EXL3 OS=Arabidopsis thaliana GN=EXL3 PE=2 SV=1
trembl
ID A0A067KKW6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08182 PE=4 SV=1
Gene Ontology
ID GO:0016298
description gdsl esterase lipase exl3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30981: 152986-155678
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002960_180 0.0 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
2 Hb_094074_010 0.0439297361 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
3 Hb_002929_040 0.0566103665 - - zinc finger protein, putative [Ricinus communis]
4 Hb_099263_010 0.0588618778 - - hypothetical protein AALP_AAs50029U000400 [Arabis alpina]
5 Hb_034299_010 0.065433354 - - F-box and wd40 domain protein, putative [Ricinus communis]
6 Hb_002042_220 0.0655649917 - - Kinesin heavy chain, putative [Ricinus communis]
7 Hb_005991_030 0.068260355 - - copper ion binding protein, putative [Ricinus communis]
8 Hb_000007_290 0.0726616348 - - hypothetical protein AALP_AAs43195U000200 [Arabis alpina]
9 Hb_002010_040 0.0766212685 - - -
10 Hb_004197_030 0.0769095774 - - hypothetical protein JCGZ_16263 [Jatropha curcas]
11 Hb_004329_030 0.078084959 - - hypothetical protein JCGZ_17335 [Jatropha curcas]
12 Hb_003647_070 0.0888125848 - - hypothetical protein POPTR_0006s09430g [Populus trichocarpa]
13 Hb_002675_220 0.0913078537 - - PREDICTED: probable pyridoxal biosynthesis protein PDX1.2 [Populus euphratica]
14 Hb_001051_020 0.0913298349 - - hypothetical protein L484_008044 [Morus notabilis]
15 Hb_011108_010 0.091905021 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103335582 [Prunus mume]
16 Hb_005474_070 0.0933251093 - - hypothetical protein JCGZ_10579 [Jatropha curcas]
17 Hb_002250_040 0.096496539 - - PREDICTED: transcription repressor OFP17 [Jatropha curcas]
18 Hb_045260_010 0.0994841637 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
19 Hb_000940_120 0.1007834268 - - PREDICTED: proline-rich protein 4-like isoform X2 [Pyrus x bretschneideri]
20 Hb_000015_220 0.1020199476 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]

Gene co-expression network

sample Hb_002960_180 Hb_002960_180 Hb_094074_010 Hb_094074_010 Hb_002960_180--Hb_094074_010 Hb_002929_040 Hb_002929_040 Hb_002960_180--Hb_002929_040 Hb_099263_010 Hb_099263_010 Hb_002960_180--Hb_099263_010 Hb_034299_010 Hb_034299_010 Hb_002960_180--Hb_034299_010 Hb_002042_220 Hb_002042_220 Hb_002960_180--Hb_002042_220 Hb_005991_030 Hb_005991_030 Hb_002960_180--Hb_005991_030 Hb_004197_030 Hb_004197_030 Hb_094074_010--Hb_004197_030 Hb_094074_010--Hb_002042_220 Hb_094074_010--Hb_002929_040 Hb_094074_010--Hb_034299_010 Hb_094074_010--Hb_099263_010 Hb_004329_030 Hb_004329_030 Hb_002929_040--Hb_004329_030 Hb_002929_040--Hb_005991_030 Hb_002929_040--Hb_034299_010 Hb_002929_040--Hb_099263_010 Hb_099263_010--Hb_005991_030 Hb_011108_010 Hb_011108_010 Hb_099263_010--Hb_011108_010 Hb_000007_290 Hb_000007_290 Hb_099263_010--Hb_000007_290 Hb_002010_040 Hb_002010_040 Hb_099263_010--Hb_002010_040 Hb_045260_010 Hb_045260_010 Hb_099263_010--Hb_045260_010 Hb_001051_020 Hb_001051_020 Hb_034299_010--Hb_001051_020 Hb_034299_010--Hb_004329_030 Hb_034299_010--Hb_099263_010 Hb_034299_010--Hb_000007_290 Hb_034299_010--Hb_002010_040 Hb_002042_220--Hb_000007_290 Hb_005474_070 Hb_005474_070 Hb_002042_220--Hb_005474_070 Hb_002042_220--Hb_002010_040 Hb_002042_220--Hb_004197_030 Hb_003647_070 Hb_003647_070 Hb_002042_220--Hb_003647_070 Hb_000940_120 Hb_000940_120 Hb_002042_220--Hb_000940_120 Hb_005991_030--Hb_011108_010 Hb_135887_010 Hb_135887_010 Hb_005991_030--Hb_135887_010 Hb_005228_050 Hb_005228_050 Hb_005991_030--Hb_005228_050 Hb_000724_040 Hb_000724_040 Hb_005991_030--Hb_000724_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.443731 12.1524 78.7525 0 0.0824755
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.044135 0.0347154 0 0.0557025 233.545

CAGE analysis