Hb_000015_220

Information

Type transcription factor
Description TF Family: B3
Location Contig15: 186809-198339
Sequence    

Annotation

kegg
ID fve:101303135
description uncharacterized protein LOC101303135
nr
ID XP_012091546.1
description PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
swissprot
ID Q8L3W1
description B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana GN=VRN1 PE=1 SV=1
trembl
ID A0A067LJW4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01470 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000015_220 0.0 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
2 Hb_012049_010 0.0662298307 - - hypothetical protein B456_002G055100 [Gossypium raimondii]
3 Hb_000043_060 0.0799501528 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 35 [Jatropha curcas]
4 Hb_004197_030 0.0804849263 - - hypothetical protein JCGZ_16263 [Jatropha curcas]
5 Hb_094074_010 0.081192668 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
6 Hb_002294_020 0.0903443085 - - PREDICTED: uncharacterized protein LOC105629874 [Jatropha curcas]
7 Hb_002960_180 0.1020199476 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
8 Hb_002042_220 0.1023249157 - - Kinesin heavy chain, putative [Ricinus communis]
9 Hb_000940_120 0.1034771714 - - PREDICTED: proline-rich protein 4-like isoform X2 [Pyrus x bretschneideri]
10 Hb_002929_040 0.1079470432 - - zinc finger protein, putative [Ricinus communis]
11 Hb_004113_030 0.1144936684 - - -
12 Hb_004329_030 0.1174066135 - - hypothetical protein JCGZ_17335 [Jatropha curcas]
13 Hb_002445_020 0.1214005777 - - -
14 Hb_000758_060 0.1214178387 - - PREDICTED: GDSL esterase/lipase At5g45960 [Jatropha curcas]
15 Hb_135174_010 0.1232583658 - - Glycosyl hydrolase family protein 43 isoform 2 [Theobroma cacao]
16 Hb_004528_030 0.1232584478 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
17 Hb_001140_310 0.1232584625 - - hypothetical protein AMTR_s00025p00025050 [Amborella trichopoda]
18 Hb_008021_030 0.1232654583 - - short-chain dehydrogenase, putative [Ricinus communis]
19 Hb_003653_040 0.1233275586 - - hypothetical protein SORBIDRAFT_05g024215 [Sorghum bicolor]
20 Hb_020956_050 0.1233347754 - - PREDICTED: uncharacterized protein LOC102670328 [Glycine max]

Gene co-expression network

sample Hb_000015_220 Hb_000015_220 Hb_012049_010 Hb_012049_010 Hb_000015_220--Hb_012049_010 Hb_000043_060 Hb_000043_060 Hb_000015_220--Hb_000043_060 Hb_004197_030 Hb_004197_030 Hb_000015_220--Hb_004197_030 Hb_094074_010 Hb_094074_010 Hb_000015_220--Hb_094074_010 Hb_002294_020 Hb_002294_020 Hb_000015_220--Hb_002294_020 Hb_002960_180 Hb_002960_180 Hb_000015_220--Hb_002960_180 Hb_012049_010--Hb_004197_030 Hb_012049_010--Hb_000043_060 Hb_012049_010--Hb_094074_010 Hb_004329_030 Hb_004329_030 Hb_012049_010--Hb_004329_030 Hb_000940_120 Hb_000940_120 Hb_012049_010--Hb_000940_120 Hb_000043_060--Hb_002294_020 Hb_000758_060 Hb_000758_060 Hb_000043_060--Hb_000758_060 Hb_000043_060--Hb_004197_030 Hb_000043_060--Hb_094074_010 Hb_004113_030 Hb_004113_030 Hb_000043_060--Hb_004113_030 Hb_004197_030--Hb_000940_120 Hb_002042_220 Hb_002042_220 Hb_004197_030--Hb_002042_220 Hb_004197_030--Hb_094074_010 Hb_003058_150 Hb_003058_150 Hb_004197_030--Hb_003058_150 Hb_005474_070 Hb_005474_070 Hb_004197_030--Hb_005474_070 Hb_000007_290 Hb_000007_290 Hb_004197_030--Hb_000007_290 Hb_094074_010--Hb_002960_180 Hb_094074_010--Hb_002042_220 Hb_002929_040 Hb_002929_040 Hb_094074_010--Hb_002929_040 Hb_034299_010 Hb_034299_010 Hb_094074_010--Hb_034299_010 Hb_099263_010 Hb_099263_010 Hb_094074_010--Hb_099263_010 Hb_001081_070 Hb_001081_070 Hb_002294_020--Hb_001081_070 Hb_002294_020--Hb_004113_030 Hb_002294_020--Hb_000758_060 Hb_001681_010 Hb_001681_010 Hb_002294_020--Hb_001681_010 Hb_184398_010 Hb_184398_010 Hb_002294_020--Hb_184398_010 Hb_002960_180--Hb_002929_040 Hb_002960_180--Hb_099263_010 Hb_002960_180--Hb_034299_010 Hb_002960_180--Hb_002042_220 Hb_005991_030 Hb_005991_030 Hb_002960_180--Hb_005991_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0102826 0.0864679 0 0.00407433
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.376877

CAGE analysis