Hb_012049_010

Information

Type -
Description -
Location Contig12049: 6783-8645
Sequence    

Annotation

kegg
ID mtr:MTR_4g034990
description Photosystem II reaction center protein M
nr
ID KJB13068.1
description hypothetical protein B456_002G055100 [Gossypium raimondii]
swissprot
ID Q70Y09
description Photosystem II reaction center protein M OS=Amborella trichopoda GN=psbM PE=3 SV=1
trembl
ID A0A0D2NIM2
description Gossypium raimondii chromosome 2, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_002G055100 PE=4 SV=1
Gene Ontology
ID GO:0009523
description photosystem ii protein m

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012049_010 0.0 - - hypothetical protein B456_002G055100 [Gossypium raimondii]
2 Hb_000015_220 0.0662298307 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
3 Hb_004197_030 0.0934580231 - - hypothetical protein JCGZ_16263 [Jatropha curcas]
4 Hb_000043_060 0.0955039679 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 35 [Jatropha curcas]
5 Hb_094074_010 0.1004683538 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
6 Hb_004329_030 0.1056532238 - - hypothetical protein JCGZ_17335 [Jatropha curcas]
7 Hb_000940_120 0.1066495236 - - PREDICTED: proline-rich protein 4-like isoform X2 [Pyrus x bretschneideri]
8 Hb_002960_180 0.10678196 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
9 Hb_002042_220 0.1096675085 - - Kinesin heavy chain, putative [Ricinus communis]
10 Hb_002294_020 0.1104393338 - - PREDICTED: uncharacterized protein LOC105629874 [Jatropha curcas]
11 Hb_002600_110 0.1130496413 - - hypothetical protein POPTR_0004s10540g [Populus trichocarpa]
12 Hb_002929_040 0.1132987203 - - zinc finger protein, putative [Ricinus communis]
13 Hb_003253_030 0.1177806116 - - lysosomal pro-X carboxypeptidase, putative [Ricinus communis]
14 Hb_002445_020 0.1178432259 - - -
15 Hb_004113_030 0.1187452731 - - -
16 Hb_001051_020 0.1202670518 - - hypothetical protein L484_008044 [Morus notabilis]
17 Hb_000844_060 0.1216164074 - - PREDICTED: uncharacterized protein LOC105633706 [Jatropha curcas]
18 Hb_003952_030 0.1217547028 - - hypothetical protein JCGZ_16620 [Jatropha curcas]
19 Hb_034299_010 0.1241767888 - - F-box and wd40 domain protein, putative [Ricinus communis]
20 Hb_183479_030 0.1270915574 - - Photosystem I reaction center subunit V, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_012049_010 Hb_012049_010 Hb_000015_220 Hb_000015_220 Hb_012049_010--Hb_000015_220 Hb_004197_030 Hb_004197_030 Hb_012049_010--Hb_004197_030 Hb_000043_060 Hb_000043_060 Hb_012049_010--Hb_000043_060 Hb_094074_010 Hb_094074_010 Hb_012049_010--Hb_094074_010 Hb_004329_030 Hb_004329_030 Hb_012049_010--Hb_004329_030 Hb_000940_120 Hb_000940_120 Hb_012049_010--Hb_000940_120 Hb_000015_220--Hb_000043_060 Hb_000015_220--Hb_004197_030 Hb_000015_220--Hb_094074_010 Hb_002294_020 Hb_002294_020 Hb_000015_220--Hb_002294_020 Hb_002960_180 Hb_002960_180 Hb_000015_220--Hb_002960_180 Hb_004197_030--Hb_000940_120 Hb_002042_220 Hb_002042_220 Hb_004197_030--Hb_002042_220 Hb_004197_030--Hb_094074_010 Hb_003058_150 Hb_003058_150 Hb_004197_030--Hb_003058_150 Hb_005474_070 Hb_005474_070 Hb_004197_030--Hb_005474_070 Hb_000007_290 Hb_000007_290 Hb_004197_030--Hb_000007_290 Hb_000043_060--Hb_002294_020 Hb_000758_060 Hb_000758_060 Hb_000043_060--Hb_000758_060 Hb_000043_060--Hb_004197_030 Hb_000043_060--Hb_094074_010 Hb_004113_030 Hb_004113_030 Hb_000043_060--Hb_004113_030 Hb_094074_010--Hb_002960_180 Hb_094074_010--Hb_002042_220 Hb_002929_040 Hb_002929_040 Hb_094074_010--Hb_002929_040 Hb_034299_010 Hb_034299_010 Hb_094074_010--Hb_034299_010 Hb_099263_010 Hb_099263_010 Hb_094074_010--Hb_099263_010 Hb_001051_020 Hb_001051_020 Hb_004329_030--Hb_001051_020 Hb_004329_030--Hb_034299_010 Hb_002081_140 Hb_002081_140 Hb_004329_030--Hb_002081_140 Hb_004329_030--Hb_002960_180 Hb_004329_030--Hb_094074_010 Hb_004329_030--Hb_002929_040 Hb_000940_120--Hb_003058_150 Hb_000940_120--Hb_002042_220 Hb_001140_110 Hb_001140_110 Hb_000940_120--Hb_001140_110 Hb_000940_120--Hb_005474_070 Hb_003647_070 Hb_003647_070 Hb_000940_120--Hb_003647_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.15352 0.14311 3.57859 23.0774 0.145815 0.967192
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.365066 0 0 0.266499 103.133

CAGE analysis