Hb_002474_020

Information

Type -
Description -
Location Contig2474: 9877-16957
Sequence    

Annotation

kegg
ID bvg:104903457
description uncharacterized LOC104903457
nr
ID XP_010240905.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104585652 [Nelumbo nucifera]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A5C050
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041046 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002474_020 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104585652 [Nelumbo nucifera]
2 Hb_001267_020 0.0961963798 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
3 Hb_004291_060 0.1117316086 - - hypothetical protein F775_42457 [Aegilops tauschii]
4 Hb_003559_010 0.1157333288 - - Peroxidase 27 precursor, putative [Ricinus communis]
5 Hb_000247_060 0.1162103066 transcription factor TF Family: bHLH PREDICTED: transcription factor ORG2-like isoform X1 [Jatropha curcas]
6 Hb_000450_110 0.1258921989 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
7 Hb_000138_180 0.1333102205 - - PREDICTED: uncharacterized protein LOC105131773 [Populus euphratica]
8 Hb_067971_010 0.135781756 - - polyprotein [Citrus endogenous pararetrovirus]
9 Hb_002764_020 0.1361498539 - - hypothetical protein JCGZ_24084 [Jatropha curcas]
10 Hb_009004_020 0.1388792555 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
11 Hb_000758_060 0.1427354008 - - PREDICTED: GDSL esterase/lipase At5g45960 [Jatropha curcas]
12 Hb_006616_070 0.1601527481 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
13 Hb_007718_040 0.1619666176 - - hypothetical protein PRUPE_ppb025054mg [Prunus persica]
14 Hb_000920_340 0.1647423098 - - o-methyltransferase, putative [Ricinus communis]
15 Hb_006827_010 0.1721855393 - - retrotransposon protein, putative, unclassified, expressed [Oryza sativa Japonica Group]
16 Hb_001459_020 0.1781534206 - - ankyrin repeat protein [Bruguiera gymnorhiza]
17 Hb_149345_010 0.1798451862 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
18 Hb_000193_090 0.1804434074 - - cysteine protease, putative [Ricinus communis]
19 Hb_002445_020 0.1844512394 - - -
20 Hb_000043_060 0.1847494213 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 35 [Jatropha curcas]

Gene co-expression network

sample Hb_002474_020 Hb_002474_020 Hb_001267_020 Hb_001267_020 Hb_002474_020--Hb_001267_020 Hb_004291_060 Hb_004291_060 Hb_002474_020--Hb_004291_060 Hb_003559_010 Hb_003559_010 Hb_002474_020--Hb_003559_010 Hb_000247_060 Hb_000247_060 Hb_002474_020--Hb_000247_060 Hb_000450_110 Hb_000450_110 Hb_002474_020--Hb_000450_110 Hb_000138_180 Hb_000138_180 Hb_002474_020--Hb_000138_180 Hb_001267_020--Hb_000138_180 Hb_006616_070 Hb_006616_070 Hb_001267_020--Hb_006616_070 Hb_006827_010 Hb_006827_010 Hb_001267_020--Hb_006827_010 Hb_001267_020--Hb_000450_110 Hb_001267_020--Hb_000247_060 Hb_000193_090 Hb_000193_090 Hb_004291_060--Hb_000193_090 Hb_004291_060--Hb_003559_010 Hb_001221_250 Hb_001221_250 Hb_004291_060--Hb_001221_250 Hb_067971_010 Hb_067971_010 Hb_004291_060--Hb_067971_010 Hb_007590_030 Hb_007590_030 Hb_004291_060--Hb_007590_030 Hb_003559_010--Hb_067971_010 Hb_000758_060 Hb_000758_060 Hb_003559_010--Hb_000758_060 Hb_000920_340 Hb_000920_340 Hb_003559_010--Hb_000920_340 Hb_002764_020 Hb_002764_020 Hb_003559_010--Hb_002764_020 Hb_000247_060--Hb_000450_110 Hb_009004_020 Hb_009004_020 Hb_000247_060--Hb_009004_020 Hb_000247_060--Hb_000758_060 Hb_003882_030 Hb_003882_030 Hb_000247_060--Hb_003882_030 Hb_002874_250 Hb_002874_250 Hb_000247_060--Hb_002874_250 Hb_000450_110--Hb_006616_070 Hb_000450_110--Hb_009004_020 Hb_002395_040 Hb_002395_040 Hb_000450_110--Hb_002395_040 Hb_000138_180--Hb_006827_010 Hb_000138_180--Hb_006616_070 Hb_000138_180--Hb_000450_110 Hb_004643_020 Hb_004643_020 Hb_000138_180--Hb_004643_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0055763 0 0.0125411 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0645636

CAGE analysis