Hb_009004_020

Information

Type -
Description -
Location Contig9004: 2481-3103
Sequence    

Annotation

kegg
ID vvi:100852683
description putative disease resistance RPP13-like protein 1
nr
ID XP_012065628.1
description PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067DB74
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g043252mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009004_020 0.0 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
2 Hb_002764_020 0.0589903233 - - hypothetical protein JCGZ_24084 [Jatropha curcas]
3 Hb_048694_010 0.0819904876 - - catalytic, putative [Ricinus communis]
4 Hb_000758_060 0.090224945 - - PREDICTED: GDSL esterase/lipase At5g45960 [Jatropha curcas]
5 Hb_002600_110 0.0924161294 - - hypothetical protein POPTR_0004s10540g [Populus trichocarpa]
6 Hb_000768_080 0.0933146398 - - Mlo protein [Hevea brasiliensis]
7 Hb_002445_020 0.0986619749 - - -
8 Hb_000776_120 0.1017906572 - - PREDICTED: cytochrome P450 78A5 [Jatropha curcas]
9 Hb_000247_060 0.108251096 transcription factor TF Family: bHLH PREDICTED: transcription factor ORG2-like isoform X1 [Jatropha curcas]
10 Hb_008864_050 0.1113069723 - - protein binding protein, putative [Ricinus communis]
11 Hb_000043_060 0.1122901289 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 35 [Jatropha curcas]
12 Hb_006331_010 0.1163965827 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
13 Hb_001775_010 0.1202770143 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002294_020 0.1207067114 - - PREDICTED: uncharacterized protein LOC105629874 [Jatropha curcas]
15 Hb_003952_030 0.1245617465 - - hypothetical protein JCGZ_16620 [Jatropha curcas]
16 Hb_001999_330 0.1267232975 - - hypothetical protein PRUPE_ppa022262mg, partial [Prunus persica]
17 Hb_001081_070 0.1273750148 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
18 Hb_004030_010 0.1276071476 - - hypothetical protein CICLE_v10013050mg [Citrus clementina]
19 Hb_000450_110 0.1282620268 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
20 Hb_183479_030 0.1291426047 - - Photosystem I reaction center subunit V, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_009004_020 Hb_009004_020 Hb_002764_020 Hb_002764_020 Hb_009004_020--Hb_002764_020 Hb_048694_010 Hb_048694_010 Hb_009004_020--Hb_048694_010 Hb_000758_060 Hb_000758_060 Hb_009004_020--Hb_000758_060 Hb_002600_110 Hb_002600_110 Hb_009004_020--Hb_002600_110 Hb_000768_080 Hb_000768_080 Hb_009004_020--Hb_000768_080 Hb_002445_020 Hb_002445_020 Hb_009004_020--Hb_002445_020 Hb_002764_020--Hb_002445_020 Hb_007718_040 Hb_007718_040 Hb_002764_020--Hb_007718_040 Hb_002764_020--Hb_000768_080 Hb_000920_340 Hb_000920_340 Hb_002764_020--Hb_000920_340 Hb_002764_020--Hb_002600_110 Hb_006331_010 Hb_006331_010 Hb_048694_010--Hb_006331_010 Hb_048694_010--Hb_002600_110 Hb_183479_030 Hb_183479_030 Hb_048694_010--Hb_183479_030 Hb_006272_010 Hb_006272_010 Hb_048694_010--Hb_006272_010 Hb_001715_050 Hb_001715_050 Hb_048694_010--Hb_001715_050 Hb_083242_040 Hb_083242_040 Hb_048694_010--Hb_083242_040 Hb_000043_060 Hb_000043_060 Hb_000758_060--Hb_000043_060 Hb_002294_020 Hb_002294_020 Hb_000758_060--Hb_002294_020 Hb_004466_080 Hb_004466_080 Hb_000758_060--Hb_004466_080 Hb_025654_010 Hb_025654_010 Hb_000758_060--Hb_025654_010 Hb_011540_050 Hb_011540_050 Hb_000758_060--Hb_011540_050 Hb_187301_010 Hb_187301_010 Hb_000758_060--Hb_187301_010 Hb_002600_110--Hb_183479_030 Hb_002600_110--Hb_000768_080 Hb_001775_010 Hb_001775_010 Hb_002600_110--Hb_001775_010 Hb_001080_290 Hb_001080_290 Hb_002600_110--Hb_001080_290 Hb_002600_110--Hb_002445_020 Hb_000768_080--Hb_001775_010 Hb_008864_050 Hb_008864_050 Hb_000768_080--Hb_008864_050 Hb_010021_040 Hb_010021_040 Hb_000768_080--Hb_010021_040 Hb_000768_080--Hb_001080_290 Hb_000768_080--Hb_002445_020 Hb_002445_020--Hb_000920_340 Hb_042123_010 Hb_042123_010 Hb_002445_020--Hb_042123_010 Hb_002445_020--Hb_007718_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0451842 0.0336116 0.188807 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.40075

CAGE analysis