Hb_000193_090

Information

Type -
Description -
Location Contig193: 54777-71328
Sequence    

Annotation

kegg
ID rcu:RCOM_0362160
description cysteine protease, putative (EC:1.3.1.74)
nr
ID XP_002531151.1
description cysteine protease, putative [Ricinus communis]
swissprot
ID A2XQE8
description Senescence-specific cysteine protease SAG39 OS=Oryza sativa subsp. indica GN=OsI_14861 PE=3 SV=1
trembl
ID B9SYT2
description Cysteine protease, putative OS=Ricinus communis GN=RCOM_0362160 PE=3 SV=1
Gene Ontology
ID GO:0008234
description senescence-specific cysteine protease sag39-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000193_090 0.0 - - cysteine protease, putative [Ricinus communis]
2 Hb_001221_250 0.0707725538 - - -
3 Hb_007590_030 0.092272324 - - PREDICTED: iridoid synthase [Jatropha curcas]
4 Hb_125181_010 0.1005195679 - - PREDICTED: uncharacterized protein LOC104115096 [Nicotiana tomentosiformis]
5 Hb_004291_060 0.1058988622 - - hypothetical protein F775_42457 [Aegilops tauschii]
6 Hb_011358_010 0.1189625512 - - -
7 Hb_112791_030 0.1309687811 - - Uncharacterized protein TCM_027940 [Theobroma cacao]
8 Hb_145080_010 0.1363921775 - - PREDICTED: uncharacterized protein LOC105643750 [Jatropha curcas]
9 Hb_019925_010 0.142024844 - - PREDICTED: long-chain-alcohol oxidase FAO4A-like [Jatropha curcas]
10 Hb_149345_010 0.1484304796 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
11 Hb_037519_010 0.1497924222 - - PREDICTED: auxin-induced in root cultures protein 12-like [Jatropha curcas]
12 Hb_002447_100 0.1597557748 - - hypothetical protein POPTR_0009s06260g [Populus trichocarpa]
13 Hb_016734_040 0.1623118404 - - abhydrolase domain containing, putative [Ricinus communis]
14 Hb_006351_120 0.1679692825 - - hypothetical protein CICLE_v10030803mg [Citrus clementina]
15 Hb_000207_240 0.1789738156 - - hypothetical protein RCOM_0686540 [Ricinus communis]
16 Hb_005018_030 0.1791278725 - - hypothetical protein CICLE_v10019811mg [Citrus clementina]
17 Hb_002474_020 0.1804434074 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104585652 [Nelumbo nucifera]
18 Hb_044380_010 0.1829524639 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Malus domestica]
19 Hb_004530_010 0.1840139299 - - PREDICTED: uncharacterized protein LOC104898079 [Beta vulgaris subsp. vulgaris]
20 Hb_012691_060 0.1842700173 - - PREDICTED: isoflavone 2'-hydroxylase-like isoform X1 [Prunus mume]

Gene co-expression network

sample Hb_000193_090 Hb_000193_090 Hb_001221_250 Hb_001221_250 Hb_000193_090--Hb_001221_250 Hb_007590_030 Hb_007590_030 Hb_000193_090--Hb_007590_030 Hb_125181_010 Hb_125181_010 Hb_000193_090--Hb_125181_010 Hb_004291_060 Hb_004291_060 Hb_000193_090--Hb_004291_060 Hb_011358_010 Hb_011358_010 Hb_000193_090--Hb_011358_010 Hb_112791_030 Hb_112791_030 Hb_000193_090--Hb_112791_030 Hb_001221_250--Hb_125181_010 Hb_019925_010 Hb_019925_010 Hb_001221_250--Hb_019925_010 Hb_001221_250--Hb_007590_030 Hb_001221_250--Hb_004291_060 Hb_044380_010 Hb_044380_010 Hb_001221_250--Hb_044380_010 Hb_002447_100 Hb_002447_100 Hb_007590_030--Hb_002447_100 Hb_007590_030--Hb_125181_010 Hb_004530_010 Hb_004530_010 Hb_007590_030--Hb_004530_010 Hb_007590_030--Hb_112791_030 Hb_125181_010--Hb_019925_010 Hb_125181_010--Hb_044380_010 Hb_006351_120 Hb_006351_120 Hb_125181_010--Hb_006351_120 Hb_002474_020 Hb_002474_020 Hb_004291_060--Hb_002474_020 Hb_003559_010 Hb_003559_010 Hb_004291_060--Hb_003559_010 Hb_067971_010 Hb_067971_010 Hb_004291_060--Hb_067971_010 Hb_004291_060--Hb_007590_030 Hb_011358_010--Hb_112791_030 Hb_145080_010 Hb_145080_010 Hb_011358_010--Hb_145080_010 Hb_037519_010 Hb_037519_010 Hb_011358_010--Hb_037519_010 Hb_011432_010 Hb_011432_010 Hb_011358_010--Hb_011432_010 Hb_002973_130 Hb_002973_130 Hb_011358_010--Hb_002973_130 Hb_112791_030--Hb_145080_010 Hb_112791_030--Hb_011432_010 Hb_112791_030--Hb_037519_010 Hb_112791_030--Hb_002973_130 Hb_007295_020 Hb_007295_020 Hb_112791_030--Hb_007295_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0110263 0 0.0279033 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00474176 0.0764412

CAGE analysis