Hb_002447_100

Information

Type -
Description -
Location Contig2447: 89976-94600
Sequence    

Annotation

kegg
ID rcu:RCOM_0964460
description cinnamoyl-CoA reductase, putative (EC:1.1.1.219)
nr
ID XP_006379087.1
description hypothetical protein POPTR_0009s06260g [Populus trichocarpa]
swissprot
ID P51104
description Dihydroflavonol-4-reductase OS=Dianthus caryophyllus GN=A PE=2 SV=1
trembl
ID U5G3H4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s06260g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002447_100 0.0 - - hypothetical protein POPTR_0009s06260g [Populus trichocarpa]
2 Hb_155423_010 0.1002412751 - - -
3 Hb_007590_030 0.1028616102 - - PREDICTED: iridoid synthase [Jatropha curcas]
4 Hb_112791_030 0.1348437493 - - Uncharacterized protein TCM_027940 [Theobroma cacao]
5 Hb_001542_010 0.1350623648 - - hypothetical protein, partial [Pseudomonas fluorescens]
6 Hb_145080_010 0.1405500135 - - PREDICTED: uncharacterized protein LOC105643750 [Jatropha curcas]
7 Hb_011358_010 0.147444017 - - -
8 Hb_009851_090 0.1528981617 - - Protein ABIL2, putative [Ricinus communis]
9 Hb_003994_070 0.1547542249 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
10 Hb_002631_270 0.1568322203 transcription factor TF Family: MYB hypothetical protein POPTR_0005s09930g [Populus trichocarpa]
11 Hb_000193_090 0.1597557748 - - cysteine protease, putative [Ricinus communis]
12 Hb_151870_010 0.1661548864 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
13 Hb_000567_270 0.1669286762 - - hypothetical protein L484_017162 [Morus notabilis]
14 Hb_006807_010 0.1677862744 - - hypothetical protein JCGZ_20881 [Jatropha curcas]
15 Hb_094917_010 0.1681486739 - - -
16 Hb_001355_060 0.1690105554 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
17 Hb_032016_010 0.1690674311 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like isoform X1 [Citrus sinensis]
18 Hb_003311_020 0.1711180491 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007295_020 0.1841880752 - - Uncharacterized protein TCM_034658 [Theobroma cacao]
20 Hb_004530_010 0.1865570345 - - PREDICTED: uncharacterized protein LOC104898079 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_002447_100 Hb_002447_100 Hb_155423_010 Hb_155423_010 Hb_002447_100--Hb_155423_010 Hb_007590_030 Hb_007590_030 Hb_002447_100--Hb_007590_030 Hb_112791_030 Hb_112791_030 Hb_002447_100--Hb_112791_030 Hb_001542_010 Hb_001542_010 Hb_002447_100--Hb_001542_010 Hb_145080_010 Hb_145080_010 Hb_002447_100--Hb_145080_010 Hb_011358_010 Hb_011358_010 Hb_002447_100--Hb_011358_010 Hb_002631_270 Hb_002631_270 Hb_155423_010--Hb_002631_270 Hb_003994_070 Hb_003994_070 Hb_155423_010--Hb_003994_070 Hb_009851_090 Hb_009851_090 Hb_155423_010--Hb_009851_090 Hb_151870_010 Hb_151870_010 Hb_155423_010--Hb_151870_010 Hb_000567_270 Hb_000567_270 Hb_155423_010--Hb_000567_270 Hb_000193_090 Hb_000193_090 Hb_007590_030--Hb_000193_090 Hb_001221_250 Hb_001221_250 Hb_007590_030--Hb_001221_250 Hb_125181_010 Hb_125181_010 Hb_007590_030--Hb_125181_010 Hb_004530_010 Hb_004530_010 Hb_007590_030--Hb_004530_010 Hb_007590_030--Hb_112791_030 Hb_112791_030--Hb_145080_010 Hb_112791_030--Hb_011358_010 Hb_011432_010 Hb_011432_010 Hb_112791_030--Hb_011432_010 Hb_037519_010 Hb_037519_010 Hb_112791_030--Hb_037519_010 Hb_002973_130 Hb_002973_130 Hb_112791_030--Hb_002973_130 Hb_007295_020 Hb_007295_020 Hb_112791_030--Hb_007295_020 Hb_002598_030 Hb_002598_030 Hb_001542_010--Hb_002598_030 Hb_147604_010 Hb_147604_010 Hb_001542_010--Hb_147604_010 Hb_149345_010 Hb_149345_010 Hb_001542_010--Hb_149345_010 Hb_001250_030 Hb_001250_030 Hb_001542_010--Hb_001250_030 Hb_003311_020 Hb_003311_020 Hb_001542_010--Hb_003311_020 Hb_145080_010--Hb_011358_010 Hb_145080_010--Hb_011432_010 Hb_145080_010--Hb_037519_010 Hb_145080_010--Hb_007295_020 Hb_145080_010--Hb_002973_130 Hb_011358_010--Hb_037519_010 Hb_011358_010--Hb_011432_010 Hb_011358_010--Hb_002973_130 Hb_011358_010--Hb_000193_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0193362 0 0.0386553 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0336353 0.17047

CAGE analysis