Hb_009851_090

Information

Type -
Description -
Location Contig9851: 91262-94423
Sequence    

Annotation

kegg
ID rcu:RCOM_1312200
description Protein ABIL2, putative
nr
ID XP_002518857.1
description Protein ABIL2, putative [Ricinus communis]
swissprot
ID Q9M3A3
description Protein ABIL2 OS=Arabidopsis thaliana GN=ABIL2 PE=2 SV=1
trembl
ID B9RYN8
description Protein ABIL2, putative OS=Ricinus communis GN=RCOM_1312200 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64639: 91378-93592 , PASA_asmbl_64640: 92496-93953
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009851_090 0.0 - - Protein ABIL2, putative [Ricinus communis]
2 Hb_032016_010 0.0815970962 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like isoform X1 [Citrus sinensis]
3 Hb_003994_070 0.0835562832 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
4 Hb_003311_020 0.0920416506 - - conserved hypothetical protein [Ricinus communis]
5 Hb_155423_010 0.0987778123 - - -
6 Hb_002631_270 0.11092406 transcription factor TF Family: MYB hypothetical protein POPTR_0005s09930g [Populus trichocarpa]
7 Hb_000567_270 0.1175885602 - - hypothetical protein L484_017162 [Morus notabilis]
8 Hb_151870_010 0.1191452481 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
9 Hb_040245_010 0.122128679 - - hypothetical protein CISIN_1g039575mg, partial [Citrus sinensis]
10 Hb_000644_020 0.1247129358 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
11 Hb_003073_030 0.1264381618 - - conserved hypothetical protein [Ricinus communis]
12 Hb_035651_010 0.1280851759 - - receptor-kinase, putative [Ricinus communis]
13 Hb_007533_050 0.1391882842 - - -
14 Hb_000415_080 0.1421519082 - - -
15 Hb_020831_070 0.1448371581 - - hypothetical protein VITISV_027174 [Vitis vinifera]
16 Hb_005920_030 0.1462382138 - - putative polyprotein [Oryza sativa Japonica Group]
17 Hb_017225_030 0.1478138615 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
18 Hb_014510_030 0.1522022474 - - hypothetical protein VITISV_027576 [Vitis vinifera]
19 Hb_002447_100 0.1528981617 - - hypothetical protein POPTR_0009s06260g [Populus trichocarpa]
20 Hb_093388_010 0.1551653474 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]

Gene co-expression network

sample Hb_009851_090 Hb_009851_090 Hb_032016_010 Hb_032016_010 Hb_009851_090--Hb_032016_010 Hb_003994_070 Hb_003994_070 Hb_009851_090--Hb_003994_070 Hb_003311_020 Hb_003311_020 Hb_009851_090--Hb_003311_020 Hb_155423_010 Hb_155423_010 Hb_009851_090--Hb_155423_010 Hb_002631_270 Hb_002631_270 Hb_009851_090--Hb_002631_270 Hb_000567_270 Hb_000567_270 Hb_009851_090--Hb_000567_270 Hb_007533_050 Hb_007533_050 Hb_032016_010--Hb_007533_050 Hb_032016_010--Hb_003311_020 Hb_003073_030 Hb_003073_030 Hb_032016_010--Hb_003073_030 Hb_040245_010 Hb_040245_010 Hb_032016_010--Hb_040245_010 Hb_032016_010--Hb_000567_270 Hb_003994_070--Hb_003311_020 Hb_003994_070--Hb_155423_010 Hb_035651_010 Hb_035651_010 Hb_003994_070--Hb_035651_010 Hb_005920_030 Hb_005920_030 Hb_003994_070--Hb_005920_030 Hb_001250_030 Hb_001250_030 Hb_003994_070--Hb_001250_030 Hb_003311_020--Hb_000567_270 Hb_003311_020--Hb_007533_050 Hb_000432_020 Hb_000432_020 Hb_003311_020--Hb_000432_020 Hb_155423_010--Hb_002631_270 Hb_002447_100 Hb_002447_100 Hb_155423_010--Hb_002447_100 Hb_151870_010 Hb_151870_010 Hb_155423_010--Hb_151870_010 Hb_155423_010--Hb_000567_270 Hb_002631_270--Hb_151870_010 Hb_017225_030 Hb_017225_030 Hb_002631_270--Hb_017225_030 Hb_006807_010 Hb_006807_010 Hb_002631_270--Hb_006807_010 Hb_029727_010 Hb_029727_010 Hb_002631_270--Hb_029727_010 Hb_000567_270--Hb_007533_050 Hb_000644_020 Hb_000644_020 Hb_000567_270--Hb_000644_020 Hb_006455_020 Hb_006455_020 Hb_000567_270--Hb_006455_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.3899 3.13994 9.05313 0 0.0326218
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.157209 0.12369 0.0389403 10.4633 58.1748

CAGE analysis