Hb_040245_010

Information

Type -
Description -
Location Contig40245: 15-1919
Sequence    

Annotation

kegg
ID sly:101245993
description extensin-2
nr
ID KDO46429.1
description hypothetical protein CISIN_1g039575mg, partial [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A068V2D4
description Coffea canephora DH200=94 genomic scaffold, scaffold_90 OS=Coffea canephora GN=GSCOC_T00042068001 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39955: 284-1841
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_040245_010 0.0 - - hypothetical protein CISIN_1g039575mg, partial [Citrus sinensis]
2 Hb_000415_080 0.0463543408 - - -
3 Hb_003073_030 0.0524920299 - - conserved hypothetical protein [Ricinus communis]
4 Hb_014510_030 0.0747605418 - - hypothetical protein VITISV_027576 [Vitis vinifera]
5 Hb_000199_090 0.0824896481 - - Tetrapyrrole-binding family protein [Populus trichocarpa]
6 Hb_000627_110 0.0861211784 - - cellulose synthase, putative [Ricinus communis]
7 Hb_032016_010 0.1011361386 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like isoform X1 [Citrus sinensis]
8 Hb_077151_010 0.1045056149 - - ankyrin repeat protein [Bruguiera gymnorhiza]
9 Hb_004896_030 0.1145635664 - - hypothetical protein VITISV_007475 [Vitis vinifera]
10 Hb_000644_020 0.1154794727 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
11 Hb_054865_040 0.1158415867 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
12 Hb_001856_290 0.1214830557 - - hypothetical protein JCGZ_16255 [Jatropha curcas]
13 Hb_102761_010 0.1217651557 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
14 Hb_009851_090 0.122128679 - - Protein ABIL2, putative [Ricinus communis]
15 Hb_005092_070 0.125111002 - - Oligopeptide transporter, putative [Ricinus communis]
16 Hb_002111_010 0.1287368595 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
17 Hb_170878_020 0.1384410426 - - -
18 Hb_094484_010 0.1422731892 - - kinase, putative [Ricinus communis]
19 Hb_005678_030 0.1428586843 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
20 Hb_151870_010 0.1449424653 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_040245_010 Hb_040245_010 Hb_000415_080 Hb_000415_080 Hb_040245_010--Hb_000415_080 Hb_003073_030 Hb_003073_030 Hb_040245_010--Hb_003073_030 Hb_014510_030 Hb_014510_030 Hb_040245_010--Hb_014510_030 Hb_000199_090 Hb_000199_090 Hb_040245_010--Hb_000199_090 Hb_000627_110 Hb_000627_110 Hb_040245_010--Hb_000627_110 Hb_032016_010 Hb_032016_010 Hb_040245_010--Hb_032016_010 Hb_000415_080--Hb_003073_030 Hb_000415_080--Hb_000627_110 Hb_000415_080--Hb_014510_030 Hb_000415_080--Hb_000199_090 Hb_102761_010 Hb_102761_010 Hb_000415_080--Hb_102761_010 Hb_003073_030--Hb_014510_030 Hb_003073_030--Hb_000199_090 Hb_077151_010 Hb_077151_010 Hb_003073_030--Hb_077151_010 Hb_003073_030--Hb_000627_110 Hb_014510_030--Hb_000199_090 Hb_014510_030--Hb_000627_110 Hb_004896_030 Hb_004896_030 Hb_014510_030--Hb_004896_030 Hb_000199_090--Hb_000627_110 Hb_000199_090--Hb_004896_030 Hb_114893_010 Hb_114893_010 Hb_000199_090--Hb_114893_010 Hb_000627_110--Hb_004896_030 Hb_029386_010 Hb_029386_010 Hb_000627_110--Hb_029386_010 Hb_007533_050 Hb_007533_050 Hb_032016_010--Hb_007533_050 Hb_009851_090 Hb_009851_090 Hb_032016_010--Hb_009851_090 Hb_003311_020 Hb_003311_020 Hb_032016_010--Hb_003311_020 Hb_032016_010--Hb_003073_030 Hb_000567_270 Hb_000567_270 Hb_032016_010--Hb_000567_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0392075 1.77391 5.89171 10.7838 0.0829028 0.0182432
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0398551 0.188106 0 8.01037 60.1308

CAGE analysis