Hb_000450_110

Information

Type -
Description -
Location Contig450: 110673-116449
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa021229mg
description hypothetical protein
nr
ID XP_007213082.1
description hypothetical protein PRUPE_ppa021229mg [Prunus persica]
swissprot
ID P10394
description Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=3 SV=1
trembl
ID M5WLY8
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021229mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000450_110 0.0 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
2 Hb_000247_060 0.0443378651 transcription factor TF Family: bHLH PREDICTED: transcription factor ORG2-like isoform X1 [Jatropha curcas]
3 Hb_006616_070 0.1177125243 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
4 Hb_001267_020 0.1190220181 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
5 Hb_002474_020 0.1258921989 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104585652 [Nelumbo nucifera]
6 Hb_009004_020 0.1282620268 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
7 Hb_002395_040 0.1440930678 - - unknown [Populus trichocarpa]
8 Hb_000138_180 0.1456615846 - - PREDICTED: uncharacterized protein LOC105131773 [Populus euphratica]
9 Hb_005087_020 0.1525826364 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
10 Hb_158575_010 0.1526942073 - - conserved hypothetical protein [Ricinus communis]
11 Hb_157680_010 0.1527289693 - - PREDICTED: uncharacterized protein LOC103444007 [Malus domestica]
12 Hb_004453_120 0.152927176 - - ammonium transporter, putative [Ricinus communis]
13 Hb_176140_010 0.1532357731 - - polyprotein [Oryza australiensis]
14 Hb_006827_010 0.1532783039 - - retrotransposon protein, putative, unclassified, expressed [Oryza sativa Japonica Group]
15 Hb_001779_050 0.1533309777 - - polyprotein [Ananas comosus]
16 Hb_000758_060 0.1537994154 - - PREDICTED: GDSL esterase/lipase At5g45960 [Jatropha curcas]
17 Hb_001338_010 0.1551504292 transcription factor TF Family: GNAT GCN5-related N-acetyltransferase family protein [Populus trichocarpa]
18 Hb_003882_030 0.1553614554 - - putative retrotransposon protein [Phyllostachys edulis]
19 Hb_079902_010 0.1559928921 - - cytochrome c biogenesis B (mitochondrion) [Hevea brasiliensis]
20 Hb_000031_070 0.1560935242 - - Thioredoxin domain-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000450_110 Hb_000450_110 Hb_000247_060 Hb_000247_060 Hb_000450_110--Hb_000247_060 Hb_006616_070 Hb_006616_070 Hb_000450_110--Hb_006616_070 Hb_001267_020 Hb_001267_020 Hb_000450_110--Hb_001267_020 Hb_002474_020 Hb_002474_020 Hb_000450_110--Hb_002474_020 Hb_009004_020 Hb_009004_020 Hb_000450_110--Hb_009004_020 Hb_002395_040 Hb_002395_040 Hb_000450_110--Hb_002395_040 Hb_000247_060--Hb_009004_020 Hb_000758_060 Hb_000758_060 Hb_000247_060--Hb_000758_060 Hb_000247_060--Hb_002474_020 Hb_003882_030 Hb_003882_030 Hb_000247_060--Hb_003882_030 Hb_002874_250 Hb_002874_250 Hb_000247_060--Hb_002874_250 Hb_006827_010 Hb_006827_010 Hb_006616_070--Hb_006827_010 Hb_000138_180 Hb_000138_180 Hb_006616_070--Hb_000138_180 Hb_006616_070--Hb_001267_020 Hb_001300_090 Hb_001300_090 Hb_006616_070--Hb_001300_090 Hb_006616_070--Hb_000247_060 Hb_001267_020--Hb_000138_180 Hb_001267_020--Hb_006827_010 Hb_001267_020--Hb_002474_020 Hb_001267_020--Hb_000247_060 Hb_004291_060 Hb_004291_060 Hb_002474_020--Hb_004291_060 Hb_003559_010 Hb_003559_010 Hb_002474_020--Hb_003559_010 Hb_002474_020--Hb_000138_180 Hb_002764_020 Hb_002764_020 Hb_009004_020--Hb_002764_020 Hb_048694_010 Hb_048694_010 Hb_009004_020--Hb_048694_010 Hb_009004_020--Hb_000758_060 Hb_002600_110 Hb_002600_110 Hb_009004_020--Hb_002600_110 Hb_000768_080 Hb_000768_080 Hb_009004_020--Hb_000768_080 Hb_002445_020 Hb_002445_020 Hb_009004_020--Hb_002445_020 Hb_000907_010 Hb_000907_010 Hb_002395_040--Hb_000907_010 Hb_020154_010 Hb_020154_010 Hb_002395_040--Hb_020154_010 Hb_025628_010 Hb_025628_010 Hb_002395_040--Hb_025628_010 Hb_000540_180 Hb_000540_180 Hb_002395_040--Hb_000540_180 Hb_006663_080 Hb_006663_080 Hb_002395_040--Hb_006663_080 Hb_000373_140 Hb_000373_140 Hb_002395_040--Hb_000373_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00387702 0 0.00573823 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0752036

CAGE analysis