Hb_006663_080

Information

Type -
Description -
Location Contig6663: 93205-94695
Sequence    

Annotation

kegg
ID vvi:104878039
description uncharacterized LOC104878039
nr
ID XP_009614563.1
description PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID B9STF4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1318880 PE=4 SV=1
Gene Ontology
ID GO:0043170
description retrotransposon unclassified

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53265: 83892-129449
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006663_080 0.0 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
2 Hb_003625_030 0.0182620331 - - retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group]
3 Hb_004683_030 0.0190012672 - - PREDICTED: uncharacterized protein LOC105778947 [Gossypium raimondii]
4 Hb_000629_090 0.0206505855 - - hypothetical protein JCGZ_09480 [Jatropha curcas]
5 Hb_039164_010 0.0209727021 - - -
6 Hb_041711_040 0.0212742955 - - hypothetical protein, partial [Pseudomonas fluorescens]
7 Hb_152483_010 0.0226426508 - - hypothetical protein JCGZ_22450 [Jatropha curcas]
8 Hb_000540_180 0.0276073157 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
9 Hb_025628_010 0.0280200075 - - PREDICTED: uncharacterized protein LOC104233990 [Nicotiana sylvestris]
10 Hb_000710_100 0.0458326154 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
11 Hb_010623_010 0.0470318473 - - PREDICTED: uncharacterized protein LOC105643732 [Jatropha curcas]
12 Hb_000311_130 0.0507413658 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
13 Hb_020154_010 0.0601313399 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_002260_210 0.0824611256 - - unnamed protein product [Vitis vinifera]
15 Hb_000108_030 0.0824893903 - - -
16 Hb_000710_110 0.0910530629 - - Vps51/Vps67 [Citrus endogenous pararetrovirus]
17 Hb_006221_020 0.0965191914 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
18 Hb_002395_040 0.0972649284 - - unknown [Populus trichocarpa]
19 Hb_010023_020 0.1171366751 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_006617_030 0.1172704914 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]

Gene co-expression network

sample Hb_006663_080 Hb_006663_080 Hb_003625_030 Hb_003625_030 Hb_006663_080--Hb_003625_030 Hb_004683_030 Hb_004683_030 Hb_006663_080--Hb_004683_030 Hb_000629_090 Hb_000629_090 Hb_006663_080--Hb_000629_090 Hb_039164_010 Hb_039164_010 Hb_006663_080--Hb_039164_010 Hb_041711_040 Hb_041711_040 Hb_006663_080--Hb_041711_040 Hb_152483_010 Hb_152483_010 Hb_006663_080--Hb_152483_010 Hb_003625_030--Hb_004683_030 Hb_003625_030--Hb_000629_090 Hb_003625_030--Hb_039164_010 Hb_003625_030--Hb_041711_040 Hb_003625_030--Hb_152483_010 Hb_004683_030--Hb_000629_090 Hb_004683_030--Hb_039164_010 Hb_004683_030--Hb_041711_040 Hb_004683_030--Hb_152483_010 Hb_000629_090--Hb_039164_010 Hb_000629_090--Hb_041711_040 Hb_000629_090--Hb_152483_010 Hb_039164_010--Hb_041711_040 Hb_039164_010--Hb_152483_010 Hb_041711_040--Hb_152483_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0516766 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.557363

CAGE analysis