Hb_003625_030

Information

Type -
Description -
Location Contig3625: 41356-54753
Sequence    

Annotation

kegg
ID tcc:TCM_033222
description Retrotransposon protein, putative
nr
ID ABA95128.1
description retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group]
swissprot
ID P31843
description RNA-directed DNA polymerase homolog OS=Oenothera berteroana PE=4 SV=1
trembl
ID Q2R082
description Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. japonica GN=LOC_Os11g43460 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003625_030 0.0 - - retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group]
2 Hb_004683_030 0.0007396714 - - PREDICTED: uncharacterized protein LOC105778947 [Gossypium raimondii]
3 Hb_000629_090 0.0023900815 - - hypothetical protein JCGZ_09480 [Jatropha curcas]
4 Hb_039164_010 0.0027124299 - - -
5 Hb_041711_040 0.0030142458 - - hypothetical protein, partial [Pseudomonas fluorescens]
6 Hb_152483_010 0.0043836767 - - hypothetical protein JCGZ_22450 [Jatropha curcas]
7 Hb_006663_080 0.0182620331 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
8 Hb_000710_100 0.0276072768 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
9 Hb_010623_010 0.0288089857 - - PREDICTED: uncharacterized protein LOC105643732 [Jatropha curcas]
10 Hb_000311_130 0.0325265912 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
11 Hb_000540_180 0.0458246918 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
12 Hb_025628_010 0.0462362569 - - PREDICTED: uncharacterized protein LOC104233990 [Nicotiana sylvestris]
13 Hb_002260_210 0.0643392067 - - unnamed protein product [Vitis vinifera]
14 Hb_000108_030 0.0643675713 - - -
15 Hb_000710_110 0.072962746 - - Vps51/Vps67 [Citrus endogenous pararetrovirus]
16 Hb_020154_010 0.0782115952 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_006221_020 0.0784502302 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
18 Hb_010023_020 0.0991561718 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_006617_030 0.0992906 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
20 Hb_002020_030 0.1003324989 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]

Gene co-expression network

sample Hb_003625_030 Hb_003625_030 Hb_004683_030 Hb_004683_030 Hb_003625_030--Hb_004683_030 Hb_000629_090 Hb_000629_090 Hb_003625_030--Hb_000629_090 Hb_039164_010 Hb_039164_010 Hb_003625_030--Hb_039164_010 Hb_041711_040 Hb_041711_040 Hb_003625_030--Hb_041711_040 Hb_152483_010 Hb_152483_010 Hb_003625_030--Hb_152483_010 Hb_006663_080 Hb_006663_080 Hb_003625_030--Hb_006663_080 Hb_004683_030--Hb_000629_090 Hb_004683_030--Hb_039164_010 Hb_004683_030--Hb_041711_040 Hb_004683_030--Hb_152483_010 Hb_004683_030--Hb_006663_080 Hb_000629_090--Hb_039164_010 Hb_000629_090--Hb_041711_040 Hb_000629_090--Hb_152483_010 Hb_000629_090--Hb_006663_080 Hb_039164_010--Hb_041711_040 Hb_039164_010--Hb_152483_010 Hb_039164_010--Hb_006663_080 Hb_041711_040--Hb_152483_010 Hb_041711_040--Hb_006663_080 Hb_152483_010--Hb_006663_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00419481 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0389549

CAGE analysis