Hb_025628_010

Information

Type -
Description -
Location Contig25628: 22094-29011
Sequence    

Annotation

kegg
ID tcc:TCM_039121
description DNA/RNA polymerases superfamily protein
nr
ID XP_009785775.1
description PREDICTED: uncharacterized protein LOC104233990 [Nicotiana sylvestris]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID Q10F38
description Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os03g47840 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025628_010 0.0 - - PREDICTED: uncharacterized protein LOC104233990 [Nicotiana sylvestris]
2 Hb_000540_180 0.0004133987 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
3 Hb_006663_080 0.0280200075 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
4 Hb_020154_010 0.032243782 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_003625_030 0.0462362569 - - retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group]
6 Hb_004683_030 0.04697298 - - PREDICTED: uncharacterized protein LOC105778947 [Gossypium raimondii]
7 Hb_000629_090 0.0486165232 - - hypothetical protein JCGZ_09480 [Jatropha curcas]
8 Hb_039164_010 0.0489374843 - - -
9 Hb_041711_040 0.0492379876 - - hypothetical protein, partial [Pseudomonas fluorescens]
10 Hb_152483_010 0.0506012991 - - hypothetical protein JCGZ_22450 [Jatropha curcas]
11 Hb_000710_100 0.0736831133 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
12 Hb_010623_010 0.0748756788 - - PREDICTED: uncharacterized protein LOC105643732 [Jatropha curcas]
13 Hb_000311_130 0.0785639659 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
14 Hb_002395_040 0.0813536815 - - unknown [Populus trichocarpa]
15 Hb_000907_010 0.0990772584 - - Ankyrin repeat-containing-like protein [Theobroma cacao]
16 Hb_002260_210 0.1100686264 - - unnamed protein product [Vitis vinifera]
17 Hb_000108_030 0.1100966756 - - -
18 Hb_000710_110 0.1185933504 - - Vps51/Vps67 [Citrus endogenous pararetrovirus]
19 Hb_006221_020 0.1240150222 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
20 Hb_000373_140 0.1319389569 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]

Gene co-expression network

sample Hb_025628_010 Hb_025628_010 Hb_000540_180 Hb_000540_180 Hb_025628_010--Hb_000540_180 Hb_006663_080 Hb_006663_080 Hb_025628_010--Hb_006663_080 Hb_020154_010 Hb_020154_010 Hb_025628_010--Hb_020154_010 Hb_003625_030 Hb_003625_030 Hb_025628_010--Hb_003625_030 Hb_004683_030 Hb_004683_030 Hb_025628_010--Hb_004683_030 Hb_000629_090 Hb_000629_090 Hb_025628_010--Hb_000629_090 Hb_000540_180--Hb_006663_080 Hb_000540_180--Hb_020154_010 Hb_000540_180--Hb_003625_030 Hb_000540_180--Hb_004683_030 Hb_000540_180--Hb_000629_090 Hb_006663_080--Hb_003625_030 Hb_006663_080--Hb_004683_030 Hb_006663_080--Hb_000629_090 Hb_039164_010 Hb_039164_010 Hb_006663_080--Hb_039164_010 Hb_041711_040 Hb_041711_040 Hb_006663_080--Hb_041711_040 Hb_152483_010 Hb_152483_010 Hb_006663_080--Hb_152483_010 Hb_020154_010--Hb_006663_080 Hb_002395_040 Hb_002395_040 Hb_020154_010--Hb_002395_040 Hb_000907_010 Hb_000907_010 Hb_020154_010--Hb_000907_010 Hb_020154_010--Hb_003625_030 Hb_003625_030--Hb_004683_030 Hb_003625_030--Hb_000629_090 Hb_003625_030--Hb_039164_010 Hb_003625_030--Hb_041711_040 Hb_003625_030--Hb_152483_010 Hb_004683_030--Hb_000629_090 Hb_004683_030--Hb_039164_010 Hb_004683_030--Hb_041711_040 Hb_004683_030--Hb_152483_010 Hb_000629_090--Hb_039164_010 Hb_000629_090--Hb_041711_040 Hb_000629_090--Hb_152483_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0059657 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.082585

CAGE analysis