Hb_020154_010

Information

Type -
Description -
Location Contig20154: 4145-7682
Sequence    

Annotation

kegg
ID pmum:103326132
description uncharacterized LOC103326132
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P31843
description RNA-directed DNA polymerase homolog OS=Oenothera berteroana PE=4 SV=1
trembl
ID M5X787
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022673mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020154_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_025628_010 0.032243782 - - PREDICTED: uncharacterized protein LOC104233990 [Nicotiana sylvestris]
3 Hb_000540_180 0.0326560206 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
4 Hb_006663_080 0.0601313399 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
5 Hb_002395_040 0.0724870541 - - unknown [Populus trichocarpa]
6 Hb_000907_010 0.0727146382 - - Ankyrin repeat-containing-like protein [Theobroma cacao]
7 Hb_003625_030 0.0782115952 - - retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group]
8 Hb_004683_030 0.078942124 - - PREDICTED: uncharacterized protein LOC105778947 [Gossypium raimondii]
9 Hb_000629_090 0.0805716684 - - hypothetical protein JCGZ_09480 [Jatropha curcas]
10 Hb_039164_010 0.080889867 - - -
11 Hb_041711_040 0.0811877754 - - hypothetical protein, partial [Pseudomonas fluorescens]
12 Hb_152483_010 0.082539213 - - hypothetical protein JCGZ_22450 [Jatropha curcas]
13 Hb_000710_100 0.1053969181 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
14 Hb_010623_010 0.1065768317 - - PREDICTED: uncharacterized protein LOC105643732 [Jatropha curcas]
15 Hb_000311_130 0.1102253928 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
16 Hb_000373_140 0.1231511491 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
17 Hb_004987_040 0.1318903233 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
18 Hb_004208_040 0.1329015971 - - UDP-glycosyltransferase 86A1 [Morus notabilis]
19 Hb_001790_110 0.1387494197 - - unknown [Populus trichocarpa]
20 Hb_002260_210 0.1413588362 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_020154_010 Hb_020154_010 Hb_025628_010 Hb_025628_010 Hb_020154_010--Hb_025628_010 Hb_000540_180 Hb_000540_180 Hb_020154_010--Hb_000540_180 Hb_006663_080 Hb_006663_080 Hb_020154_010--Hb_006663_080 Hb_002395_040 Hb_002395_040 Hb_020154_010--Hb_002395_040 Hb_000907_010 Hb_000907_010 Hb_020154_010--Hb_000907_010 Hb_003625_030 Hb_003625_030 Hb_020154_010--Hb_003625_030 Hb_025628_010--Hb_000540_180 Hb_025628_010--Hb_006663_080 Hb_025628_010--Hb_003625_030 Hb_004683_030 Hb_004683_030 Hb_025628_010--Hb_004683_030 Hb_000629_090 Hb_000629_090 Hb_025628_010--Hb_000629_090 Hb_000540_180--Hb_006663_080 Hb_000540_180--Hb_003625_030 Hb_000540_180--Hb_004683_030 Hb_000540_180--Hb_000629_090 Hb_006663_080--Hb_003625_030 Hb_006663_080--Hb_004683_030 Hb_006663_080--Hb_000629_090 Hb_039164_010 Hb_039164_010 Hb_006663_080--Hb_039164_010 Hb_041711_040 Hb_041711_040 Hb_006663_080--Hb_041711_040 Hb_152483_010 Hb_152483_010 Hb_006663_080--Hb_152483_010 Hb_002395_040--Hb_000907_010 Hb_002395_040--Hb_025628_010 Hb_002395_040--Hb_000540_180 Hb_002395_040--Hb_006663_080 Hb_000373_140 Hb_000373_140 Hb_002395_040--Hb_000373_140 Hb_001790_110 Hb_001790_110 Hb_000907_010--Hb_001790_110 Hb_000907_010--Hb_025628_010 Hb_000907_010--Hb_000540_180 Hb_004208_040 Hb_004208_040 Hb_000907_010--Hb_004208_040 Hb_003625_030--Hb_004683_030 Hb_003625_030--Hb_000629_090 Hb_003625_030--Hb_039164_010 Hb_003625_030--Hb_041711_040 Hb_003625_030--Hb_152483_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0078123 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.149736

CAGE analysis