Hb_006827_010

Information

Type -
Description -
Location Contig6827: 60259-63595
Sequence    

Annotation

kegg
ID sot:102595311
description uncharacterized LOC102595311
nr
ID ABA97970.1
description retrotransposon protein, putative, unclassified, expressed [Oryza sativa Japonica Group]
swissprot
ID Q9P2P1
description Protein NYNRIN OS=Homo sapiens GN=NYNRIN PE=2 SV=3
trembl
ID Q2QSH9
description Retrotransposon protein, putative, unclassified, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os12g24050 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006827_010 0.0 - - retrotransposon protein, putative, unclassified, expressed [Oryza sativa Japonica Group]
2 Hb_006616_070 0.0402673537 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
3 Hb_000138_180 0.0464275592 - - PREDICTED: uncharacterized protein LOC105131773 [Populus euphratica]
4 Hb_001267_020 0.0777465199 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
5 Hb_001300_090 0.1423103991 - - PREDICTED: glutaredoxin-C11 [Jatropha curcas]
6 Hb_004643_020 0.1482029296 - - hypothetical protein AMTR_s05716p00004100, partial [Amborella trichopoda]
7 Hb_002990_020 0.1503247338 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
8 Hb_000450_110 0.1532783039 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
9 Hb_000672_130 0.1625826332 - - hypothetical protein POPTR_0010s22870g [Populus trichocarpa]
10 Hb_006221_020 0.1640441421 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
11 Hb_000710_110 0.1641228507 - - Vps51/Vps67 [Citrus endogenous pararetrovirus]
12 Hb_000108_030 0.1646082257 - - -
13 Hb_002260_210 0.1646105547 - - unnamed protein product [Vitis vinifera]
14 Hb_010023_020 0.1653753404 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_006617_030 0.1653923434 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
16 Hb_002020_030 0.1655277455 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
17 Hb_030085_050 0.1656608513 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
18 Hb_000266_070 0.1657052207 desease resistance Gene Name: NB-ARC PREDICTED: uncharacterized protein LOC105765578 [Gossypium raimondii]
19 Hb_159777_010 0.1658870185 - - JHL22C18.10 [Jatropha curcas]
20 Hb_073373_010 0.1661008522 - - hypothetical protein JCGZ_11284 [Jatropha curcas]

Gene co-expression network

sample Hb_006827_010 Hb_006827_010 Hb_006616_070 Hb_006616_070 Hb_006827_010--Hb_006616_070 Hb_000138_180 Hb_000138_180 Hb_006827_010--Hb_000138_180 Hb_001267_020 Hb_001267_020 Hb_006827_010--Hb_001267_020 Hb_001300_090 Hb_001300_090 Hb_006827_010--Hb_001300_090 Hb_004643_020 Hb_004643_020 Hb_006827_010--Hb_004643_020 Hb_002990_020 Hb_002990_020 Hb_006827_010--Hb_002990_020 Hb_006616_070--Hb_000138_180 Hb_006616_070--Hb_001267_020 Hb_000450_110 Hb_000450_110 Hb_006616_070--Hb_000450_110 Hb_006616_070--Hb_001300_090 Hb_000247_060 Hb_000247_060 Hb_006616_070--Hb_000247_060 Hb_000138_180--Hb_001267_020 Hb_002474_020 Hb_002474_020 Hb_000138_180--Hb_002474_020 Hb_000138_180--Hb_000450_110 Hb_000138_180--Hb_004643_020 Hb_001267_020--Hb_002474_020 Hb_001267_020--Hb_000450_110 Hb_001267_020--Hb_000247_060 Hb_000208_220 Hb_000208_220 Hb_001300_090--Hb_000208_220 Hb_000672_130 Hb_000672_130 Hb_001300_090--Hb_000672_130 Hb_001300_090--Hb_004643_020 Hb_003796_010 Hb_003796_010 Hb_001300_090--Hb_003796_010 Hb_029510_060 Hb_029510_060 Hb_001300_090--Hb_029510_060 Hb_004643_020--Hb_003796_010 Hb_089305_040 Hb_089305_040 Hb_004643_020--Hb_089305_040 Hb_004951_030 Hb_004951_030 Hb_004643_020--Hb_004951_030 Hb_004643_020--Hb_002990_020 Hb_009393_110 Hb_009393_110 Hb_004643_020--Hb_009393_110 Hb_004372_050 Hb_004372_050 Hb_002990_020--Hb_004372_050 Hb_167136_010 Hb_167136_010 Hb_002990_020--Hb_167136_010 Hb_002990_020--Hb_000138_180 Hb_002471_280 Hb_002471_280 Hb_002990_020--Hb_002471_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0331627 0 0.0116715 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.176266

CAGE analysis