Hb_009393_110

Information

Type -
Description -
Location Contig9393: 72459-73643
Sequence    

Annotation

kegg
ID rcu:RCOM_0708150
description hypothetical protein
nr
ID XP_012077163.1
description PREDICTED: circadian locomoter output cycles protein kaput [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KCQ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07572 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009393_110 0.0 - - PREDICTED: circadian locomoter output cycles protein kaput [Jatropha curcas]
2 Hb_003796_010 0.0829213999 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
3 Hb_004951_030 0.0848929782 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
4 Hb_008225_020 0.0996681029 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
5 Hb_119832_010 0.1004883573 - - -
6 Hb_000311_110 0.1215522247 - - ATP-binding cassette transporter, putative [Ricinus communis]
7 Hb_000951_070 0.1258626646 - - PREDICTED: LOW QUALITY PROTEIN: receptor-like protein kinase FERONIA [Populus euphratica]
8 Hb_004643_020 0.1278622503 - - hypothetical protein AMTR_s05716p00004100, partial [Amborella trichopoda]
9 Hb_018105_010 0.1284149257 - - hypothetical protein POPTR_0004s08710g [Populus trichocarpa]
10 Hb_089305_040 0.1316910343 - - -
11 Hb_001999_050 0.1507466685 rubber biosynthesis Gene Name: CPT7 PREDICTED: dehydrodolichyl diphosphate synthase 2 [Jatropha curcas]
12 Hb_000668_180 0.1580973534 - - hypothetical protein POPTR_0005s16490g [Populus trichocarpa]
13 Hb_000780_160 0.1586766313 - - hypothetical protein RCOM_0483300 [Ricinus communis]
14 Hb_004126_050 0.1647182614 - - PREDICTED: L-type lectin-domain containing receptor kinase VII.1 [Tarenaya hassleriana]
15 Hb_029510_060 0.1689296635 - - PREDICTED: probable plastidic glucose transporter 3 [Jatropha curcas]
16 Hb_003440_080 0.1703478773 - - polyprotein [Citrus endogenous pararetrovirus]
17 Hb_010402_040 0.1767148265 - - hypothetical protein JCGZ_21227 [Jatropha curcas]
18 Hb_005337_140 0.1804327242 - - PREDICTED: LOW QUALITY PROTEIN: wall-associated receptor kinase 1-like [Jatropha curcas]
19 Hb_000224_250 0.1843952229 - - hypothetical protein AMTR_s05400p00003230 [Amborella trichopoda]
20 Hb_006243_010 0.185759141 - - PREDICTED: cell wall protein IFF6 [Populus euphratica]

Gene co-expression network

sample Hb_009393_110 Hb_009393_110 Hb_003796_010 Hb_003796_010 Hb_009393_110--Hb_003796_010 Hb_004951_030 Hb_004951_030 Hb_009393_110--Hb_004951_030 Hb_008225_020 Hb_008225_020 Hb_009393_110--Hb_008225_020 Hb_119832_010 Hb_119832_010 Hb_009393_110--Hb_119832_010 Hb_000311_110 Hb_000311_110 Hb_009393_110--Hb_000311_110 Hb_000951_070 Hb_000951_070 Hb_009393_110--Hb_000951_070 Hb_089305_040 Hb_089305_040 Hb_003796_010--Hb_089305_040 Hb_004643_020 Hb_004643_020 Hb_003796_010--Hb_004643_020 Hb_003796_010--Hb_004951_030 Hb_003796_010--Hb_000951_070 Hb_003796_010--Hb_119832_010 Hb_004951_030--Hb_119832_010 Hb_004951_030--Hb_004643_020 Hb_018105_010 Hb_018105_010 Hb_004951_030--Hb_018105_010 Hb_004951_030--Hb_008225_020 Hb_008225_020--Hb_119832_010 Hb_008225_020--Hb_000311_110 Hb_062503_010 Hb_062503_010 Hb_008225_020--Hb_062503_010 Hb_005183_060 Hb_005183_060 Hb_008225_020--Hb_005183_060 Hb_119832_010--Hb_000311_110 Hb_029510_060 Hb_029510_060 Hb_119832_010--Hb_029510_060 Hb_003440_080 Hb_003440_080 Hb_119832_010--Hb_003440_080 Hb_001999_050 Hb_001999_050 Hb_000311_110--Hb_001999_050 Hb_000311_110--Hb_018105_010 Hb_000311_110--Hb_003440_080 Hb_000780_160 Hb_000780_160 Hb_000311_110--Hb_000780_160 Hb_010402_040 Hb_010402_040 Hb_000951_070--Hb_010402_040 Hb_000668_180 Hb_000668_180 Hb_000951_070--Hb_000668_180 Hb_000951_070--Hb_089305_040 Hb_000951_070--Hb_003440_080 Hb_004117_320 Hb_004117_320 Hb_000951_070--Hb_004117_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.21903 0.0837946 0.0585241 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.536008

CAGE analysis