Hb_003796_010

Information

Type -
Description -
Location Contig3796: 13747-21660
Sequence    

Annotation

kegg
ID tcc:TCM_017511
description Retrotransposon protein, putative
nr
ID XP_012068505.1
description PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061EEM4
description Retrotransposon protein, putative OS=Theobroma cacao GN=TCM_017511 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003796_010 0.0 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
2 Hb_089305_040 0.0638999204 - - -
3 Hb_004643_020 0.0820692474 - - hypothetical protein AMTR_s05716p00004100, partial [Amborella trichopoda]
4 Hb_004951_030 0.0821259269 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
5 Hb_009393_110 0.0829213999 - - PREDICTED: circadian locomoter output cycles protein kaput [Jatropha curcas]
6 Hb_000951_070 0.1040539112 - - PREDICTED: LOW QUALITY PROTEIN: receptor-like protein kinase FERONIA [Populus euphratica]
7 Hb_119832_010 0.1168624623 - - -
8 Hb_029510_060 0.125937251 - - PREDICTED: probable plastidic glucose transporter 3 [Jatropha curcas]
9 Hb_001300_090 0.140013279 - - PREDICTED: glutaredoxin-C11 [Jatropha curcas]
10 Hb_018105_010 0.145931047 - - hypothetical protein POPTR_0004s08710g [Populus trichocarpa]
11 Hb_010402_040 0.1601302938 - - hypothetical protein JCGZ_21227 [Jatropha curcas]
12 Hb_000311_110 0.1625048543 - - ATP-binding cassette transporter, putative [Ricinus communis]
13 Hb_008225_020 0.1636970336 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
14 Hb_001459_020 0.1665693738 - - ankyrin repeat protein [Bruguiera gymnorhiza]
15 Hb_003440_080 0.170775758 - - polyprotein [Citrus endogenous pararetrovirus]
16 Hb_000668_180 0.1712750896 - - hypothetical protein POPTR_0005s16490g [Populus trichocarpa]
17 Hb_005194_050 0.1732783916 transcription factor TF Family: GRAS SCL domain class transcription factor [Theobroma cacao]
18 Hb_000672_130 0.1805118466 - - hypothetical protein POPTR_0010s22870g [Populus trichocarpa]
19 Hb_000208_220 0.1807315934 - - -
20 Hb_057880_020 0.1864712737 - - PREDICTED: receptor-like protein kinase HSL1, partial [Jatropha curcas]

Gene co-expression network

sample Hb_003796_010 Hb_003796_010 Hb_089305_040 Hb_089305_040 Hb_003796_010--Hb_089305_040 Hb_004643_020 Hb_004643_020 Hb_003796_010--Hb_004643_020 Hb_004951_030 Hb_004951_030 Hb_003796_010--Hb_004951_030 Hb_009393_110 Hb_009393_110 Hb_003796_010--Hb_009393_110 Hb_000951_070 Hb_000951_070 Hb_003796_010--Hb_000951_070 Hb_119832_010 Hb_119832_010 Hb_003796_010--Hb_119832_010 Hb_089305_040--Hb_000951_070 Hb_089305_040--Hb_004643_020 Hb_001459_020 Hb_001459_020 Hb_089305_040--Hb_001459_020 Hb_089305_040--Hb_009393_110 Hb_089305_040--Hb_004951_030 Hb_004643_020--Hb_004951_030 Hb_001300_090 Hb_001300_090 Hb_004643_020--Hb_001300_090 Hb_002990_020 Hb_002990_020 Hb_004643_020--Hb_002990_020 Hb_004643_020--Hb_009393_110 Hb_004951_030--Hb_009393_110 Hb_004951_030--Hb_119832_010 Hb_018105_010 Hb_018105_010 Hb_004951_030--Hb_018105_010 Hb_008225_020 Hb_008225_020 Hb_004951_030--Hb_008225_020 Hb_009393_110--Hb_008225_020 Hb_009393_110--Hb_119832_010 Hb_000311_110 Hb_000311_110 Hb_009393_110--Hb_000311_110 Hb_009393_110--Hb_000951_070 Hb_010402_040 Hb_010402_040 Hb_000951_070--Hb_010402_040 Hb_000668_180 Hb_000668_180 Hb_000951_070--Hb_000668_180 Hb_003440_080 Hb_003440_080 Hb_000951_070--Hb_003440_080 Hb_004117_320 Hb_004117_320 Hb_000951_070--Hb_004117_320 Hb_119832_010--Hb_000311_110 Hb_029510_060 Hb_029510_060 Hb_119832_010--Hb_029510_060 Hb_119832_010--Hb_003440_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0318543 0.0119034 0.0129682 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.119186

CAGE analysis