Hb_001300_090

Information

Type -
Description -
Location Contig1300: 65447-68166
Sequence    

Annotation

kegg
ID rcu:RCOM_0555680
description glutaredoxin, grx, putative
nr
ID XP_012082674.1
description PREDICTED: glutaredoxin-C11 [Jatropha curcas]
swissprot
ID Q9LYC6
description Glutaredoxin-C11 OS=Arabidopsis thaliana GN=GRXC11 PE=3 SV=1
trembl
ID A0A067K760
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13866 PE=4 SV=1
Gene Ontology
ID GO:0009055
description glutaredoxin-c11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001300_090 0.0 - - PREDICTED: glutaredoxin-C11 [Jatropha curcas]
2 Hb_000208_220 0.1050017698 - - -
3 Hb_000672_130 0.1218794243 - - hypothetical protein POPTR_0010s22870g [Populus trichocarpa]
4 Hb_004643_020 0.1252684641 - - hypothetical protein AMTR_s05716p00004100, partial [Amborella trichopoda]
5 Hb_003796_010 0.140013279 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
6 Hb_006827_010 0.1423103991 - - retrotransposon protein, putative, unclassified, expressed [Oryza sativa Japonica Group]
7 Hb_029510_060 0.1429152696 - - PREDICTED: probable plastidic glucose transporter 3 [Jatropha curcas]
8 Hb_003414_020 0.1440645005 - - PREDICTED: uncharacterized protein LOC103655285 [Zea mays]
9 Hb_006616_070 0.1457946087 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
10 Hb_002553_030 0.1506707966 - - hypothetical protein POPTR_0008s16550g [Populus trichocarpa]
11 Hb_001761_160 0.1513208983 - - hypothetical protein VITISV_019364 [Vitis vinifera]
12 Hb_004951_030 0.1550823558 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
13 Hb_000138_180 0.1607626454 - - PREDICTED: uncharacterized protein LOC105131773 [Populus euphratica]
14 Hb_089305_040 0.1637364492 - - -
15 Hb_017640_010 0.1659991673 - - hypothetical protein JCGZ_18815 [Jatropha curcas]
16 Hb_004052_130 0.1692259323 - - PREDICTED: cytochrome P450 78A5 [Jatropha curcas]
17 Hb_144838_010 0.1738853617 - - hypothetical protein JCGZ_08246 [Jatropha curcas]
18 Hb_005194_050 0.1761994797 transcription factor TF Family: GRAS SCL domain class transcription factor [Theobroma cacao]
19 Hb_093388_010 0.1765855355 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
20 Hb_001267_020 0.1766200524 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]

Gene co-expression network

sample Hb_001300_090 Hb_001300_090 Hb_000208_220 Hb_000208_220 Hb_001300_090--Hb_000208_220 Hb_000672_130 Hb_000672_130 Hb_001300_090--Hb_000672_130 Hb_004643_020 Hb_004643_020 Hb_001300_090--Hb_004643_020 Hb_003796_010 Hb_003796_010 Hb_001300_090--Hb_003796_010 Hb_006827_010 Hb_006827_010 Hb_001300_090--Hb_006827_010 Hb_029510_060 Hb_029510_060 Hb_001300_090--Hb_029510_060 Hb_002553_030 Hb_002553_030 Hb_000208_220--Hb_002553_030 Hb_161881_010 Hb_161881_010 Hb_000208_220--Hb_161881_010 Hb_184798_060 Hb_184798_060 Hb_000208_220--Hb_184798_060 Hb_001761_160 Hb_001761_160 Hb_000208_220--Hb_001761_160 Hb_001081_050 Hb_001081_050 Hb_000208_220--Hb_001081_050 Hb_144838_010 Hb_144838_010 Hb_000672_130--Hb_144838_010 Hb_017640_010 Hb_017640_010 Hb_000672_130--Hb_017640_010 Hb_000672_130--Hb_004643_020 Hb_000672_130--Hb_029510_060 Hb_000672_130--Hb_006827_010 Hb_004643_020--Hb_003796_010 Hb_089305_040 Hb_089305_040 Hb_004643_020--Hb_089305_040 Hb_004951_030 Hb_004951_030 Hb_004643_020--Hb_004951_030 Hb_002990_020 Hb_002990_020 Hb_004643_020--Hb_002990_020 Hb_009393_110 Hb_009393_110 Hb_004643_020--Hb_009393_110 Hb_003796_010--Hb_089305_040 Hb_003796_010--Hb_004951_030 Hb_003796_010--Hb_009393_110 Hb_000951_070 Hb_000951_070 Hb_003796_010--Hb_000951_070 Hb_119832_010 Hb_119832_010 Hb_003796_010--Hb_119832_010 Hb_006616_070 Hb_006616_070 Hb_006827_010--Hb_006616_070 Hb_000138_180 Hb_000138_180 Hb_006827_010--Hb_000138_180 Hb_001267_020 Hb_001267_020 Hb_006827_010--Hb_001267_020 Hb_006827_010--Hb_004643_020 Hb_006827_010--Hb_002990_020 Hb_023738_010 Hb_023738_010 Hb_029510_060--Hb_023738_010 Hb_093388_010 Hb_093388_010 Hb_029510_060--Hb_093388_010 Hb_029510_060--Hb_119832_010 Hb_001250_030 Hb_001250_030 Hb_029510_060--Hb_001250_030 Hb_029510_060--Hb_000951_070 Hb_029510_060--Hb_003796_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.46594 1.27807 1.43601 0.205682 0.0769358
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0645897 34.4798

CAGE analysis