Hb_184798_060

Information

Type -
Description -
Location Contig184798: 83154-83519
Sequence    

Annotation

kegg
ID rcu:RCOM_1318880
description hypothetical protein
nr
ID XP_002529273.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9STF4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1318880 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18091: 42101-95058
cDNA
(Sanger)
(ID:Location)		 020_B09.ab1: 44045-95055

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_184798_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001761_160 0.0903636319 - - hypothetical protein VITISV_019364 [Vitis vinifera]
3 Hb_000208_220 0.1151640443 - - -
4 Hb_001081_050 0.1155532092 - - hypothetical protein POPTR_0001s07860g [Populus trichocarpa]
5 Hb_002553_030 0.1186228079 - - hypothetical protein POPTR_0008s16550g [Populus trichocarpa]
6 Hb_003414_020 0.126257429 - - PREDICTED: uncharacterized protein LOC103655285 [Zea mays]
7 Hb_003144_010 0.142217566 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
8 Hb_004924_040 0.1459811053 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
9 Hb_003058_160 0.1463275699 - - conserved hypothetical protein [Ricinus communis]
10 Hb_073467_010 0.1474735082 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
11 Hb_027638_010 0.154508736 - - Protein KES1, putative [Ricinus communis]
12 Hb_161881_010 0.1551169528 - - laccase, putative [Ricinus communis]
13 Hb_001338_090 0.1609881186 - - hypothetical protein VITISV_009275 [Vitis vinifera]
14 Hb_141990_030 0.1642172788 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
15 Hb_005736_080 0.1679745015 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
16 Hb_000373_140 0.1713242894 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
17 Hb_014109_020 0.1722194078 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
18 Hb_000123_070 0.173315157 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
19 Hb_001105_140 0.1751190473 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
20 Hb_004375_020 0.1759627488 - - hypothetical protein VITISV_034560 [Vitis vinifera]

Gene co-expression network

sample Hb_184798_060 Hb_184798_060 Hb_001761_160 Hb_001761_160 Hb_184798_060--Hb_001761_160 Hb_000208_220 Hb_000208_220 Hb_184798_060--Hb_000208_220 Hb_001081_050 Hb_001081_050 Hb_184798_060--Hb_001081_050 Hb_002553_030 Hb_002553_030 Hb_184798_060--Hb_002553_030 Hb_003414_020 Hb_003414_020 Hb_184798_060--Hb_003414_020 Hb_003144_010 Hb_003144_010 Hb_184798_060--Hb_003144_010 Hb_001761_160--Hb_003414_020 Hb_001761_160--Hb_002553_030 Hb_001761_160--Hb_000208_220 Hb_004924_040 Hb_004924_040 Hb_001761_160--Hb_004924_040 Hb_003058_160 Hb_003058_160 Hb_001761_160--Hb_003058_160 Hb_000208_220--Hb_002553_030 Hb_001300_090 Hb_001300_090 Hb_000208_220--Hb_001300_090 Hb_161881_010 Hb_161881_010 Hb_000208_220--Hb_161881_010 Hb_000208_220--Hb_001081_050 Hb_027638_010 Hb_027638_010 Hb_001081_050--Hb_027638_010 Hb_001081_050--Hb_003144_010 Hb_001081_050--Hb_161881_010 Hb_004407_030 Hb_004407_030 Hb_001081_050--Hb_004407_030 Hb_001508_010 Hb_001508_010 Hb_002553_030--Hb_001508_010 Hb_000373_140 Hb_000373_140 Hb_002553_030--Hb_000373_140 Hb_002553_030--Hb_003414_020 Hb_000108_030 Hb_000108_030 Hb_003414_020--Hb_000108_030 Hb_002260_210 Hb_002260_210 Hb_003414_020--Hb_002260_210 Hb_000710_110 Hb_000710_110 Hb_003414_020--Hb_000710_110 Hb_006221_020 Hb_006221_020 Hb_003414_020--Hb_006221_020 Hb_174230_010 Hb_174230_010 Hb_003144_010--Hb_174230_010 Hb_006495_030 Hb_006495_030 Hb_003144_010--Hb_006495_030 Hb_001136_050 Hb_001136_050 Hb_003144_010--Hb_001136_050 Hb_003053_100 Hb_003053_100 Hb_003144_010--Hb_003053_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.088854 0.0860598 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.953616

CAGE analysis