Hb_006221_020

Information

Type -
Description -
Location Contig6221: 21069-23751
Sequence    

Annotation

kegg
ID pda:103696510
description uncharacterized LOC103696510
nr
ID XP_009778385.1
description PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID M1E0L9
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400047000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006221_020 0.0 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
2 Hb_000710_110 0.0055232909 - - Vps51/Vps67 [Citrus endogenous pararetrovirus]
3 Hb_000108_030 0.0141652372 - - -
4 Hb_002260_210 0.0141937367 - - unnamed protein product [Vitis vinifera]
5 Hb_010023_020 0.020879617 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_006617_030 0.0210153602 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
7 Hb_002020_030 0.0220675291 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
8 Hb_030085_050 0.0230566249 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
9 Hb_000266_070 0.023377348 desease resistance Gene Name: NB-ARC PREDICTED: uncharacterized protein LOC105765578 [Gossypium raimondii]
10 Hb_159777_010 0.0246494215 - - JHL22C18.10 [Jatropha curcas]
11 Hb_073373_010 0.0260690965 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
12 Hb_041626_010 0.0266450169 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
13 Hb_000206_260 0.0294580053 - - cysteine protease, putative [Ricinus communis]
14 Hb_104984_010 0.0303459407 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
15 Hb_048482_010 0.0350442128 - - -
16 Hb_031104_010 0.0375895008 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
17 Hb_000283_160 0.0407900197 - - hypothetical protein JCGZ_23510 [Jatropha curcas]
18 Hb_072825_010 0.0442490196 - - Uncharacterized protein TCM_023328 [Theobroma cacao]
19 Hb_000311_130 0.0460694804 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
20 Hb_010623_010 0.0497820196 - - PREDICTED: uncharacterized protein LOC105643732 [Jatropha curcas]

Gene co-expression network

sample Hb_006221_020 Hb_006221_020 Hb_000710_110 Hb_000710_110 Hb_006221_020--Hb_000710_110 Hb_000108_030 Hb_000108_030 Hb_006221_020--Hb_000108_030 Hb_002260_210 Hb_002260_210 Hb_006221_020--Hb_002260_210 Hb_010023_020 Hb_010023_020 Hb_006221_020--Hb_010023_020 Hb_006617_030 Hb_006617_030 Hb_006221_020--Hb_006617_030 Hb_002020_030 Hb_002020_030 Hb_006221_020--Hb_002020_030 Hb_000710_110--Hb_000108_030 Hb_000710_110--Hb_002260_210 Hb_000710_110--Hb_010023_020 Hb_000710_110--Hb_006617_030 Hb_000710_110--Hb_002020_030 Hb_000108_030--Hb_002260_210 Hb_000311_130 Hb_000311_130 Hb_000108_030--Hb_000311_130 Hb_000108_030--Hb_010023_020 Hb_000108_030--Hb_006617_030 Hb_002260_210--Hb_000311_130 Hb_002260_210--Hb_010023_020 Hb_002260_210--Hb_006617_030 Hb_010023_020--Hb_006617_030 Hb_010023_020--Hb_002020_030 Hb_030085_050 Hb_030085_050 Hb_010023_020--Hb_030085_050 Hb_000266_070 Hb_000266_070 Hb_010023_020--Hb_000266_070 Hb_159777_010 Hb_159777_010 Hb_010023_020--Hb_159777_010 Hb_073373_010 Hb_073373_010 Hb_010023_020--Hb_073373_010 Hb_006617_030--Hb_002020_030 Hb_006617_030--Hb_030085_050 Hb_006617_030--Hb_000266_070 Hb_006617_030--Hb_159777_010 Hb_006617_030--Hb_073373_010 Hb_002020_030--Hb_030085_050 Hb_002020_030--Hb_000266_070 Hb_002020_030--Hb_159777_010 Hb_002020_030--Hb_073373_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0365778 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.193969

CAGE analysis