Hb_000108_030

Information

Type -
Description -
Location Contig108: 28187-28440
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000108_030 0.0 - - -
2 Hb_002260_210 2.85053e-05 - - unnamed protein product [Vitis vinifera]
3 Hb_000710_110 0.0086426158 - - Vps51/Vps67 [Citrus endogenous pararetrovirus]
4 Hb_006221_020 0.0141652372 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
5 Hb_000311_130 0.0319266871 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
6 Hb_010023_020 0.0350351266 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_006617_030 0.0351707713 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
8 Hb_010623_010 0.0356440722 - - PREDICTED: uncharacterized protein LOC105643732 [Jatropha curcas]
9 Hb_002020_030 0.036222162 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
10 Hb_000710_100 0.0368452136 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
11 Hb_030085_050 0.0372105027 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
12 Hb_000266_070 0.0375309761 desease resistance Gene Name: NB-ARC PREDICTED: uncharacterized protein LOC105765578 [Gossypium raimondii]
13 Hb_159777_010 0.0388020353 - - JHL22C18.10 [Jatropha curcas]
14 Hb_073373_010 0.0402205342 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
15 Hb_041626_010 0.0407959644 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
16 Hb_000206_260 0.0436064498 - - cysteine protease, putative [Ricinus communis]
17 Hb_104984_010 0.0444935582 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
18 Hb_048482_010 0.0491871639 - - -
19 Hb_031104_010 0.0517297234 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
20 Hb_000283_160 0.0549266157 - - hypothetical protein JCGZ_23510 [Jatropha curcas]

Gene co-expression network

sample Hb_000108_030 Hb_000108_030 Hb_002260_210 Hb_002260_210 Hb_000108_030--Hb_002260_210 Hb_000710_110 Hb_000710_110 Hb_000108_030--Hb_000710_110 Hb_006221_020 Hb_006221_020 Hb_000108_030--Hb_006221_020 Hb_000311_130 Hb_000311_130 Hb_000108_030--Hb_000311_130 Hb_010023_020 Hb_010023_020 Hb_000108_030--Hb_010023_020 Hb_006617_030 Hb_006617_030 Hb_000108_030--Hb_006617_030 Hb_002260_210--Hb_000710_110 Hb_002260_210--Hb_006221_020 Hb_002260_210--Hb_000311_130 Hb_002260_210--Hb_010023_020 Hb_002260_210--Hb_006617_030 Hb_000710_110--Hb_006221_020 Hb_000710_110--Hb_010023_020 Hb_000710_110--Hb_006617_030 Hb_002020_030 Hb_002020_030 Hb_000710_110--Hb_002020_030 Hb_006221_020--Hb_010023_020 Hb_006221_020--Hb_006617_030 Hb_006221_020--Hb_002020_030 Hb_010623_010 Hb_010623_010 Hb_000311_130--Hb_010623_010 Hb_000710_100 Hb_000710_100 Hb_000311_130--Hb_000710_100 Hb_152483_010 Hb_152483_010 Hb_000311_130--Hb_152483_010 Hb_041711_040 Hb_041711_040 Hb_000311_130--Hb_041711_040 Hb_039164_010 Hb_039164_010 Hb_000311_130--Hb_039164_010 Hb_000629_090 Hb_000629_090 Hb_000311_130--Hb_000629_090 Hb_010023_020--Hb_006617_030 Hb_010023_020--Hb_002020_030 Hb_030085_050 Hb_030085_050 Hb_010023_020--Hb_030085_050 Hb_000266_070 Hb_000266_070 Hb_010023_020--Hb_000266_070 Hb_159777_010 Hb_159777_010 Hb_010023_020--Hb_159777_010 Hb_073373_010 Hb_073373_010 Hb_010023_020--Hb_073373_010 Hb_006617_030--Hb_002020_030 Hb_006617_030--Hb_030085_050 Hb_006617_030--Hb_000266_070 Hb_006617_030--Hb_159777_010 Hb_006617_030--Hb_073373_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.413279 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 2.40464

CAGE analysis