Hb_010623_010

Information

Type -
Description -
Location Contig10623: 3736-5287
Sequence    

Annotation

kegg
ID vvi:104880344
description uncharacterized LOC104880344
nr
ID XP_012084319.1
description PREDICTED: uncharacterized protein LOC105643732 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A5AE22
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028932 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010623_010 0.0 - - PREDICTED: uncharacterized protein LOC105643732 [Jatropha curcas]
2 Hb_000710_100 0.0012030608 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
3 Hb_000311_130 0.0037224748 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
4 Hb_152483_010 0.0244299241 - - hypothetical protein JCGZ_22450 [Jatropha curcas]
5 Hb_041711_040 0.0257981024 - - hypothetical protein, partial [Pseudomonas fluorescens]
6 Hb_039164_010 0.0260996192 - - -
7 Hb_000629_090 0.0264216391 - - hypothetical protein JCGZ_09480 [Jatropha curcas]
8 Hb_004683_030 0.0280702172 - - PREDICTED: uncharacterized protein LOC105778947 [Gossypium raimondii]
9 Hb_003625_030 0.0288089857 - - retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group]
10 Hb_002260_210 0.0356156074 - - unnamed protein product [Vitis vinifera]
11 Hb_000108_030 0.0356440722 - - -
12 Hb_000710_110 0.0442717031 - - Vps51/Vps67 [Citrus endogenous pararetrovirus]
13 Hb_006663_080 0.0470318473 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
14 Hb_006221_020 0.0497820196 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
15 Hb_010023_020 0.0705876643 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_006617_030 0.0707228051 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
17 Hb_002020_030 0.0717702542 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
18 Hb_030085_050 0.0727548318 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
19 Hb_000266_070 0.073074073 desease resistance Gene Name: NB-ARC PREDICTED: uncharacterized protein LOC105765578 [Gossypium raimondii]
20 Hb_159777_010 0.0743401881 - - JHL22C18.10 [Jatropha curcas]

Gene co-expression network

sample Hb_010623_010 Hb_010623_010 Hb_000710_100 Hb_000710_100 Hb_010623_010--Hb_000710_100 Hb_000311_130 Hb_000311_130 Hb_010623_010--Hb_000311_130 Hb_152483_010 Hb_152483_010 Hb_010623_010--Hb_152483_010 Hb_041711_040 Hb_041711_040 Hb_010623_010--Hb_041711_040 Hb_039164_010 Hb_039164_010 Hb_010623_010--Hb_039164_010 Hb_000629_090 Hb_000629_090 Hb_010623_010--Hb_000629_090 Hb_000710_100--Hb_000311_130 Hb_000710_100--Hb_152483_010 Hb_000710_100--Hb_041711_040 Hb_000710_100--Hb_039164_010 Hb_000710_100--Hb_000629_090 Hb_000311_130--Hb_152483_010 Hb_000311_130--Hb_041711_040 Hb_000311_130--Hb_039164_010 Hb_000311_130--Hb_000629_090 Hb_152483_010--Hb_041711_040 Hb_152483_010--Hb_039164_010 Hb_152483_010--Hb_000629_090 Hb_004683_030 Hb_004683_030 Hb_152483_010--Hb_004683_030 Hb_003625_030 Hb_003625_030 Hb_152483_010--Hb_003625_030 Hb_006663_080 Hb_006663_080 Hb_152483_010--Hb_006663_080 Hb_041711_040--Hb_039164_010 Hb_041711_040--Hb_000629_090 Hb_041711_040--Hb_004683_030 Hb_041711_040--Hb_003625_030 Hb_041711_040--Hb_006663_080 Hb_039164_010--Hb_000629_090 Hb_039164_010--Hb_004683_030 Hb_039164_010--Hb_003625_030 Hb_039164_010--Hb_006663_080 Hb_000629_090--Hb_004683_030 Hb_000629_090--Hb_003625_030 Hb_000629_090--Hb_006663_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0170791 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.127374

CAGE analysis