Hb_000710_100

Information

Type -
Description -
Location Contig710: 101475-103098
Sequence    

Annotation

kegg
ID cam:101511883
description genome polyprotein-like
nr
ID XP_012568598.1
description PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
swissprot
ID Q91DM0
description Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd) PE=3 SV=1
trembl
ID V9QF33
description Polyprotein OS=Citrus endogenous pararetrovirus PE=4 SV=1
Gene Ontology
ID GO:0005488
description polyprotein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000710_100 0.0 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
2 Hb_010623_010 0.0012030608 - - PREDICTED: uncharacterized protein LOC105643732 [Jatropha curcas]
3 Hb_000311_130 0.0049255067 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
4 Hb_152483_010 0.0232278177 - - hypothetical protein JCGZ_22450 [Jatropha curcas]
5 Hb_041711_040 0.0245961123 - - hypothetical protein, partial [Pseudomonas fluorescens]
6 Hb_039164_010 0.0248976557 - - -
7 Hb_000629_090 0.0252197044 - - hypothetical protein JCGZ_09480 [Jatropha curcas]
8 Hb_004683_030 0.0268684361 - - PREDICTED: uncharacterized protein LOC105778947 [Gossypium raimondii]
9 Hb_003625_030 0.0276072768 - - retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group]
10 Hb_002260_210 0.0368167517 - - unnamed protein product [Vitis vinifera]
11 Hb_000108_030 0.0368452136 - - -
12 Hb_000710_110 0.0454718788 - - Vps51/Vps67 [Citrus endogenous pararetrovirus]
13 Hb_006663_080 0.0458326154 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
14 Hb_006221_020 0.0509814882 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
15 Hb_010023_020 0.0717838788 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_006617_030 0.0719189957 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
17 Hb_002020_030 0.0729662578 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
18 Hb_000540_180 0.0732740267 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
19 Hb_025628_010 0.0736831133 - - PREDICTED: uncharacterized protein LOC104233990 [Nicotiana sylvestris]
20 Hb_030085_050 0.0739506579 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]

Gene co-expression network

sample Hb_000710_100 Hb_000710_100 Hb_010623_010 Hb_010623_010 Hb_000710_100--Hb_010623_010 Hb_000311_130 Hb_000311_130 Hb_000710_100--Hb_000311_130 Hb_152483_010 Hb_152483_010 Hb_000710_100--Hb_152483_010 Hb_041711_040 Hb_041711_040 Hb_000710_100--Hb_041711_040 Hb_039164_010 Hb_039164_010 Hb_000710_100--Hb_039164_010 Hb_000629_090 Hb_000629_090 Hb_000710_100--Hb_000629_090 Hb_010623_010--Hb_000311_130 Hb_010623_010--Hb_152483_010 Hb_010623_010--Hb_041711_040 Hb_010623_010--Hb_039164_010 Hb_010623_010--Hb_000629_090 Hb_000311_130--Hb_152483_010 Hb_000311_130--Hb_041711_040 Hb_000311_130--Hb_039164_010 Hb_000311_130--Hb_000629_090 Hb_152483_010--Hb_041711_040 Hb_152483_010--Hb_039164_010 Hb_152483_010--Hb_000629_090 Hb_004683_030 Hb_004683_030 Hb_152483_010--Hb_004683_030 Hb_003625_030 Hb_003625_030 Hb_152483_010--Hb_003625_030 Hb_006663_080 Hb_006663_080 Hb_152483_010--Hb_006663_080 Hb_041711_040--Hb_039164_010 Hb_041711_040--Hb_000629_090 Hb_041711_040--Hb_004683_030 Hb_041711_040--Hb_003625_030 Hb_041711_040--Hb_006663_080 Hb_039164_010--Hb_000629_090 Hb_039164_010--Hb_004683_030 Hb_039164_010--Hb_003625_030 Hb_039164_010--Hb_006663_080 Hb_000629_090--Hb_004683_030 Hb_000629_090--Hb_003625_030 Hb_000629_090--Hb_006663_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.014101 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.106092

CAGE analysis