Hb_002260_210

Information

Type -
Description -
Location Contig2260: 281516-293519
Sequence    

Annotation

kegg
ID cic:CICLE_v10030065mg
description hypothetical protein
nr
ID CBI35556.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q39529
description Agglutinin-2 OS=Cladrastis kentukea PE=1 SV=1
trembl
ID V4RQV3
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030065mg PE=4 SV=1
Gene Ontology
ID GO:0030246
description l-type lectin-domain containing receptor kinase -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002260_210 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000108_030 2.85053e-05 - - -
3 Hb_000710_110 0.0086711189 - - Vps51/Vps67 [Citrus endogenous pararetrovirus]
4 Hb_006221_020 0.0141937367 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
5 Hb_000311_130 0.031898214 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
6 Hb_010023_020 0.0350635981 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_006617_030 0.0351992425 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
8 Hb_010623_010 0.0356156074 - - PREDICTED: uncharacterized protein LOC105643732 [Jatropha curcas]
9 Hb_002020_030 0.0362506313 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
10 Hb_000710_100 0.0368167517 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
11 Hb_030085_050 0.0372389701 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
12 Hb_000266_070 0.0375594427 desease resistance Gene Name: NB-ARC PREDICTED: uncharacterized protein LOC105765578 [Gossypium raimondii]
13 Hb_159777_010 0.0388304995 - - JHL22C18.10 [Jatropha curcas]
14 Hb_073373_010 0.0402489954 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
15 Hb_041626_010 0.0408244244 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
16 Hb_000206_260 0.0436349036 - - cysteine protease, putative [Ricinus communis]
17 Hb_104984_010 0.04452201 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
18 Hb_048482_010 0.0492156045 - - -
19 Hb_031104_010 0.0517581574 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
20 Hb_000283_160 0.0549550412 - - hypothetical protein JCGZ_23510 [Jatropha curcas]

Gene co-expression network

sample Hb_002260_210 Hb_002260_210 Hb_000108_030 Hb_000108_030 Hb_002260_210--Hb_000108_030 Hb_000710_110 Hb_000710_110 Hb_002260_210--Hb_000710_110 Hb_006221_020 Hb_006221_020 Hb_002260_210--Hb_006221_020 Hb_000311_130 Hb_000311_130 Hb_002260_210--Hb_000311_130 Hb_010023_020 Hb_010023_020 Hb_002260_210--Hb_010023_020 Hb_006617_030 Hb_006617_030 Hb_002260_210--Hb_006617_030 Hb_000108_030--Hb_000710_110 Hb_000108_030--Hb_006221_020 Hb_000108_030--Hb_000311_130 Hb_000108_030--Hb_010023_020 Hb_000108_030--Hb_006617_030 Hb_000710_110--Hb_006221_020 Hb_000710_110--Hb_010023_020 Hb_000710_110--Hb_006617_030 Hb_002020_030 Hb_002020_030 Hb_000710_110--Hb_002020_030 Hb_006221_020--Hb_010023_020 Hb_006221_020--Hb_006617_030 Hb_006221_020--Hb_002020_030 Hb_010623_010 Hb_010623_010 Hb_000311_130--Hb_010623_010 Hb_000710_100 Hb_000710_100 Hb_000311_130--Hb_000710_100 Hb_152483_010 Hb_152483_010 Hb_000311_130--Hb_152483_010 Hb_041711_040 Hb_041711_040 Hb_000311_130--Hb_041711_040 Hb_039164_010 Hb_039164_010 Hb_000311_130--Hb_039164_010 Hb_000629_090 Hb_000629_090 Hb_000311_130--Hb_000629_090 Hb_010023_020--Hb_006617_030 Hb_010023_020--Hb_002020_030 Hb_030085_050 Hb_030085_050 Hb_010023_020--Hb_030085_050 Hb_000266_070 Hb_000266_070 Hb_010023_020--Hb_000266_070 Hb_159777_010 Hb_159777_010 Hb_010023_020--Hb_159777_010 Hb_073373_010 Hb_073373_010 Hb_010023_020--Hb_073373_010 Hb_006617_030--Hb_002020_030 Hb_006617_030--Hb_030085_050 Hb_006617_030--Hb_000266_070 Hb_006617_030--Hb_159777_010 Hb_006617_030--Hb_073373_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.195596 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.13828

CAGE analysis