Hb_000710_110

Information

Type -
Description -
Location Contig710: 103188-104312
Sequence    

Annotation

kegg
ID -
description -
nr
ID YP_008992016.1
description Vps51/Vps67 [Citrus endogenous pararetrovirus]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0003824
description vps51 vps67

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000710_110 0.0 - - Vps51/Vps67 [Citrus endogenous pararetrovirus]
2 Hb_006221_020 0.0055232909 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
3 Hb_000108_030 0.0086426158 - - -
4 Hb_002260_210 0.0086711189 - - unnamed protein product [Vitis vinifera]
5 Hb_010023_020 0.0264000981 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_006617_030 0.0265358092 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
7 Hb_002020_030 0.0275877239 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
8 Hb_030085_050 0.0285765716 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
9 Hb_000266_070 0.0288972123 desease resistance Gene Name: NB-ARC PREDICTED: uncharacterized protein LOC105765578 [Gossypium raimondii]
10 Hb_159777_010 0.0301689498 - - JHL22C18.10 [Jatropha curcas]
11 Hb_073373_010 0.0315882325 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
12 Hb_041626_010 0.0321639886 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
13 Hb_000206_260 0.0349761321 - - cysteine protease, putative [Ricinus communis]
14 Hb_104984_010 0.0358637863 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
15 Hb_000311_130 0.0405571037 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
16 Hb_048482_010 0.0405604571 - - -
17 Hb_031104_010 0.0431047989 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
18 Hb_010623_010 0.0442717031 - - PREDICTED: uncharacterized protein LOC105643732 [Jatropha curcas]
19 Hb_000710_100 0.0454718788 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
20 Hb_000283_160 0.0463040514 - - hypothetical protein JCGZ_23510 [Jatropha curcas]

Gene co-expression network

sample Hb_000710_110 Hb_000710_110 Hb_006221_020 Hb_006221_020 Hb_000710_110--Hb_006221_020 Hb_000108_030 Hb_000108_030 Hb_000710_110--Hb_000108_030 Hb_002260_210 Hb_002260_210 Hb_000710_110--Hb_002260_210 Hb_010023_020 Hb_010023_020 Hb_000710_110--Hb_010023_020 Hb_006617_030 Hb_006617_030 Hb_000710_110--Hb_006617_030 Hb_002020_030 Hb_002020_030 Hb_000710_110--Hb_002020_030 Hb_006221_020--Hb_000108_030 Hb_006221_020--Hb_002260_210 Hb_006221_020--Hb_010023_020 Hb_006221_020--Hb_006617_030 Hb_006221_020--Hb_002020_030 Hb_000108_030--Hb_002260_210 Hb_000311_130 Hb_000311_130 Hb_000108_030--Hb_000311_130 Hb_000108_030--Hb_010023_020 Hb_000108_030--Hb_006617_030 Hb_002260_210--Hb_000311_130 Hb_002260_210--Hb_010023_020 Hb_002260_210--Hb_006617_030 Hb_010023_020--Hb_006617_030 Hb_010023_020--Hb_002020_030 Hb_030085_050 Hb_030085_050 Hb_010023_020--Hb_030085_050 Hb_000266_070 Hb_000266_070 Hb_010023_020--Hb_000266_070 Hb_159777_010 Hb_159777_010 Hb_010023_020--Hb_159777_010 Hb_073373_010 Hb_073373_010 Hb_010023_020--Hb_073373_010 Hb_006617_030--Hb_002020_030 Hb_006617_030--Hb_030085_050 Hb_006617_030--Hb_000266_070 Hb_006617_030--Hb_159777_010 Hb_006617_030--Hb_073373_010 Hb_002020_030--Hb_030085_050 Hb_002020_030--Hb_000266_070 Hb_002020_030--Hb_159777_010 Hb_002020_030--Hb_073373_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0461836 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.253839

CAGE analysis