Hb_010023_020

Information

Type -
Description -
Location Contig10023: 34338-41025
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010023_020 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_006617_030 0.0001357954 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
3 Hb_002020_030 0.001188391 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
4 Hb_030085_050 0.0021779234 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
5 Hb_000266_070 0.0024987953 desease resistance Gene Name: NB-ARC PREDICTED: uncharacterized protein LOC105765578 [Gossypium raimondii]
6 Hb_159777_010 0.0037714942 - - JHL22C18.10 [Jatropha curcas]
7 Hb_073373_010 0.0051919328 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
8 Hb_041626_010 0.0057681827 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
9 Hb_000206_260 0.0085829416 - - cysteine protease, putative [Ricinus communis]
10 Hb_104984_010 0.0094714911 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
11 Hb_048482_010 0.0141734464 - - -
12 Hb_031104_010 0.0167210297 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
13 Hb_000283_160 0.019924728 - - hypothetical protein JCGZ_23510 [Jatropha curcas]
14 Hb_006221_020 0.020879617 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
15 Hb_072825_010 0.023387525 - - Uncharacterized protein TCM_023328 [Theobroma cacao]
16 Hb_000710_110 0.0264000981 - - Vps51/Vps67 [Citrus endogenous pararetrovirus]
17 Hb_065059_010 0.0301876813 - - PREDICTED: uncharacterized protein LOC104907634 [Beta vulgaris subsp. vulgaris]
18 Hb_000118_050 0.0304454994 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
19 Hb_008269_020 0.0305129409 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_084299_010 0.0311067316 - - PREDICTED: uncharacterized protein LOC104233139 [Nicotiana sylvestris]

Gene co-expression network

sample Hb_010023_020 Hb_010023_020 Hb_006617_030 Hb_006617_030 Hb_010023_020--Hb_006617_030 Hb_002020_030 Hb_002020_030 Hb_010023_020--Hb_002020_030 Hb_030085_050 Hb_030085_050 Hb_010023_020--Hb_030085_050 Hb_000266_070 Hb_000266_070 Hb_010023_020--Hb_000266_070 Hb_159777_010 Hb_159777_010 Hb_010023_020--Hb_159777_010 Hb_073373_010 Hb_073373_010 Hb_010023_020--Hb_073373_010 Hb_006617_030--Hb_002020_030 Hb_006617_030--Hb_030085_050 Hb_006617_030--Hb_000266_070 Hb_006617_030--Hb_159777_010 Hb_006617_030--Hb_073373_010 Hb_002020_030--Hb_030085_050 Hb_002020_030--Hb_000266_070 Hb_002020_030--Hb_159777_010 Hb_002020_030--Hb_073373_010 Hb_030085_050--Hb_000266_070 Hb_030085_050--Hb_159777_010 Hb_030085_050--Hb_073373_010 Hb_000266_070--Hb_159777_010 Hb_000266_070--Hb_073373_010 Hb_159777_010--Hb_073373_010 Hb_041626_010 Hb_041626_010 Hb_159777_010--Hb_041626_010 Hb_073373_010--Hb_041626_010 Hb_000206_260 Hb_000206_260 Hb_073373_010--Hb_000206_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.003853 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0179119

CAGE analysis