Hb_000206_260

Information

Type -
Description -
Location Contig206: 329549-330767
Sequence    

Annotation

kegg
ID rcu:RCOM_1014880
description cysteine protease, putative (EC:1.3.1.74)
nr
ID XP_002522571.1
description cysteine protease, putative [Ricinus communis]
swissprot
ID Q9FJ47
description Senescence-specific cysteine protease SAG12 OS=Arabidopsis thaliana GN=SAG12 PE=1 SV=1
trembl
ID B9S9A2
description Cysteine protease, putative OS=Ricinus communis GN=RCOM_1014880 PE=3 SV=1
Gene Ontology
ID GO:0016787
description cysteine

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000206_260 0.0 - - cysteine protease, putative [Ricinus communis]
2 Hb_104984_010 0.0008886084 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
3 Hb_041626_010 0.0028148733 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
4 Hb_073373_010 0.003391133 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
5 Hb_159777_010 0.0048115757 - - JHL22C18.10 [Jatropha curcas]
6 Hb_048482_010 0.0055910544 - - -
7 Hb_000266_070 0.006084254 desease resistance Gene Name: NB-ARC PREDICTED: uncharacterized protein LOC105765578 [Gossypium raimondii]
8 Hb_030085_050 0.0064051172 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
9 Hb_002020_030 0.007394613 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
10 Hb_031104_010 0.0081390275 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
11 Hb_006617_030 0.0084471544 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
12 Hb_010023_020 0.0085829416 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_000283_160 0.0113433375 - - hypothetical protein JCGZ_23510 [Jatropha curcas]
14 Hb_072825_010 0.014806945 - - Uncharacterized protein TCM_023328 [Theobroma cacao]
15 Hb_065059_010 0.0216091338 - - PREDICTED: uncharacterized protein LOC104907634 [Beta vulgaris subsp. vulgaris]
16 Hb_000118_050 0.0218670402 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
17 Hb_008269_020 0.021934505 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_084299_010 0.0225285027 - - PREDICTED: uncharacterized protein LOC104233139 [Nicotiana sylvestris]
19 Hb_002656_040 0.0227713726 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
20 Hb_000001_030 0.0229984434 - - polyprotein [Citrus endogenous pararetrovirus]

Gene co-expression network

sample Hb_000206_260 Hb_000206_260 Hb_104984_010 Hb_104984_010 Hb_000206_260--Hb_104984_010 Hb_041626_010 Hb_041626_010 Hb_000206_260--Hb_041626_010 Hb_073373_010 Hb_073373_010 Hb_000206_260--Hb_073373_010 Hb_159777_010 Hb_159777_010 Hb_000206_260--Hb_159777_010 Hb_048482_010 Hb_048482_010 Hb_000206_260--Hb_048482_010 Hb_000266_070 Hb_000266_070 Hb_000206_260--Hb_000266_070 Hb_104984_010--Hb_041626_010 Hb_104984_010--Hb_073373_010 Hb_104984_010--Hb_048482_010 Hb_104984_010--Hb_159777_010 Hb_104984_010--Hb_000266_070 Hb_041626_010--Hb_073373_010 Hb_041626_010--Hb_159777_010 Hb_041626_010--Hb_000266_070 Hb_030085_050 Hb_030085_050 Hb_041626_010--Hb_030085_050 Hb_073373_010--Hb_159777_010 Hb_073373_010--Hb_000266_070 Hb_073373_010--Hb_030085_050 Hb_002020_030 Hb_002020_030 Hb_073373_010--Hb_002020_030 Hb_159777_010--Hb_000266_070 Hb_159777_010--Hb_030085_050 Hb_159777_010--Hb_002020_030 Hb_006617_030 Hb_006617_030 Hb_159777_010--Hb_006617_030 Hb_031104_010 Hb_031104_010 Hb_048482_010--Hb_031104_010 Hb_000283_160 Hb_000283_160 Hb_048482_010--Hb_000283_160 Hb_048482_010--Hb_041626_010 Hb_048482_010--Hb_073373_010 Hb_000266_070--Hb_030085_050 Hb_000266_070--Hb_002020_030 Hb_000266_070--Hb_006617_030 Hb_010023_020 Hb_010023_020 Hb_000266_070--Hb_010023_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0191356 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0844074

CAGE analysis