Hb_104984_010

Information

Type -
Description -
Location Contig104984: 21-1026
Sequence    

Annotation

kegg
ID cmo:103497647
description uncharacterized LOC103497647
nr
ID XP_012092566.1
description PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A0B0NAW6
description Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial-like protein OS=Gossypium arboreum GN=F383_13104 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_104984_010 0.0 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
2 Hb_000206_260 0.0008886084 - - cysteine protease, putative [Ricinus communis]
3 Hb_041626_010 0.0037034742 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
4 Hb_073373_010 0.0042797309 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
5 Hb_048482_010 0.0047024646 - - -
6 Hb_159777_010 0.0057001644 - - JHL22C18.10 [Jatropha curcas]
7 Hb_000266_070 0.0069728318 desease resistance Gene Name: NB-ARC PREDICTED: uncharacterized protein LOC105765578 [Gossypium raimondii]
8 Hb_031104_010 0.0072504606 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
9 Hb_030085_050 0.0072936918 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
10 Hb_002020_030 0.0082831771 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
11 Hb_006617_030 0.0093357057 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
12 Hb_010023_020 0.0094714911 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_000283_160 0.0104548119 - - hypothetical protein JCGZ_23510 [Jatropha curcas]
14 Hb_072825_010 0.0139184796 - - Uncharacterized protein TCM_023328 [Theobroma cacao]
15 Hb_065059_010 0.0207208324 - - PREDICTED: uncharacterized protein LOC104907634 [Beta vulgaris subsp. vulgaris]
16 Hb_000118_050 0.0209787463 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
17 Hb_008269_020 0.021046213 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_084299_010 0.0216402281 - - PREDICTED: uncharacterized protein LOC104233139 [Nicotiana sylvestris]
19 Hb_002656_040 0.0218831052 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
20 Hb_000001_030 0.0221101828 - - polyprotein [Citrus endogenous pararetrovirus]

Gene co-expression network

sample Hb_104984_010 Hb_104984_010 Hb_000206_260 Hb_000206_260 Hb_104984_010--Hb_000206_260 Hb_041626_010 Hb_041626_010 Hb_104984_010--Hb_041626_010 Hb_073373_010 Hb_073373_010 Hb_104984_010--Hb_073373_010 Hb_048482_010 Hb_048482_010 Hb_104984_010--Hb_048482_010 Hb_159777_010 Hb_159777_010 Hb_104984_010--Hb_159777_010 Hb_000266_070 Hb_000266_070 Hb_104984_010--Hb_000266_070 Hb_000206_260--Hb_041626_010 Hb_000206_260--Hb_073373_010 Hb_000206_260--Hb_159777_010 Hb_000206_260--Hb_048482_010 Hb_000206_260--Hb_000266_070 Hb_041626_010--Hb_073373_010 Hb_041626_010--Hb_159777_010 Hb_041626_010--Hb_000266_070 Hb_030085_050 Hb_030085_050 Hb_041626_010--Hb_030085_050 Hb_073373_010--Hb_159777_010 Hb_073373_010--Hb_000266_070 Hb_073373_010--Hb_030085_050 Hb_002020_030 Hb_002020_030 Hb_073373_010--Hb_002020_030 Hb_031104_010 Hb_031104_010 Hb_048482_010--Hb_031104_010 Hb_000283_160 Hb_000283_160 Hb_048482_010--Hb_000283_160 Hb_048482_010--Hb_041626_010 Hb_048482_010--Hb_073373_010 Hb_159777_010--Hb_000266_070 Hb_159777_010--Hb_030085_050 Hb_159777_010--Hb_002020_030 Hb_006617_030 Hb_006617_030 Hb_159777_010--Hb_006617_030 Hb_000266_070--Hb_030085_050 Hb_000266_070--Hb_002020_030 Hb_000266_070--Hb_006617_030 Hb_010023_020 Hb_010023_020 Hb_000266_070--Hb_010023_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0207504 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0910386

CAGE analysis