Hb_041626_010

Information

Type -
Description -
Location Contig41626: 21-1269
Sequence    

Annotation

kegg
ID tcc:TCM_045983
description Gag protease polyprotein-like protein
nr
ID XP_012068520.1
description PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID S1S3V9
description Gag protease polyprotein-like protein OS=Theobroma cacao GN=TCM_045983 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_041626_010 0.0 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
2 Hb_073373_010 0.0005762642 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
3 Hb_159777_010 0.0019967245 - - JHL22C18.10 [Jatropha curcas]
4 Hb_000206_260 0.0028148733 - - cysteine protease, putative [Ricinus communis]
5 Hb_000266_070 0.0032694265 desease resistance Gene Name: NB-ARC PREDICTED: uncharacterized protein LOC105765578 [Gossypium raimondii]
6 Hb_030085_050 0.0035902968 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
7 Hb_104984_010 0.0037034742 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
8 Hb_002020_030 0.0045798178 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
9 Hb_006617_030 0.005632391 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
10 Hb_010023_020 0.0057681827 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_048482_010 0.0084058219 - - -
12 Hb_031104_010 0.010953701 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
13 Hb_000283_160 0.014157853 - - hypothetical protein JCGZ_23510 [Jatropha curcas]
14 Hb_072825_010 0.0176212407 - - Uncharacterized protein TCM_023328 [Theobroma cacao]
15 Hb_065059_010 0.0244228531 - - PREDICTED: uncharacterized protein LOC104907634 [Beta vulgaris subsp. vulgaris]
16 Hb_000118_050 0.024680734 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
17 Hb_008269_020 0.024748192 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_084299_010 0.0253421297 - - PREDICTED: uncharacterized protein LOC104233139 [Nicotiana sylvestris]
19 Hb_002656_040 0.0255849746 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
20 Hb_000001_030 0.0258120219 - - polyprotein [Citrus endogenous pararetrovirus]

Gene co-expression network

sample Hb_041626_010 Hb_041626_010 Hb_073373_010 Hb_073373_010 Hb_041626_010--Hb_073373_010 Hb_159777_010 Hb_159777_010 Hb_041626_010--Hb_159777_010 Hb_000206_260 Hb_000206_260 Hb_041626_010--Hb_000206_260 Hb_000266_070 Hb_000266_070 Hb_041626_010--Hb_000266_070 Hb_030085_050 Hb_030085_050 Hb_041626_010--Hb_030085_050 Hb_104984_010 Hb_104984_010 Hb_041626_010--Hb_104984_010 Hb_073373_010--Hb_159777_010 Hb_073373_010--Hb_000266_070 Hb_073373_010--Hb_030085_050 Hb_073373_010--Hb_000206_260 Hb_002020_030 Hb_002020_030 Hb_073373_010--Hb_002020_030 Hb_159777_010--Hb_000266_070 Hb_159777_010--Hb_030085_050 Hb_159777_010--Hb_002020_030 Hb_006617_030 Hb_006617_030 Hb_159777_010--Hb_006617_030 Hb_000206_260--Hb_104984_010 Hb_000206_260--Hb_159777_010 Hb_048482_010 Hb_048482_010 Hb_000206_260--Hb_048482_010 Hb_000206_260--Hb_000266_070 Hb_000266_070--Hb_030085_050 Hb_000266_070--Hb_002020_030 Hb_000266_070--Hb_006617_030 Hb_010023_020 Hb_010023_020 Hb_000266_070--Hb_010023_020 Hb_030085_050--Hb_002020_030 Hb_030085_050--Hb_006617_030 Hb_030085_050--Hb_010023_020 Hb_104984_010--Hb_073373_010 Hb_104984_010--Hb_048482_010 Hb_104984_010--Hb_159777_010 Hb_104984_010--Hb_000266_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0421927 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.189327

CAGE analysis