Hb_031104_010

Information

Type -
Description -
Location Contig31104: 7464-12180
Sequence    

Annotation

kegg
ID tcc:TCM_033423
description hypothetical protein
nr
ID XP_012487705.1
description PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
swissprot
ID O93209
description Pro-Pol polyprotein OS=Feline foamy virus GN=pol PE=3 SV=1
trembl
ID Q7XYU5
description Integrase (Fragment) OS=Gossypium herbaceum PE=4 SV=1
Gene Ontology
ID GO:0005739
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32948: 11664-12071
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031104_010 0.0 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
2 Hb_048482_010 0.002548064 - - -
3 Hb_000283_160 0.0032045395 - - hypothetical protein JCGZ_23510 [Jatropha curcas]
4 Hb_072825_010 0.0066685371 - - Uncharacterized protein TCM_023328 [Theobroma cacao]
5 Hb_104984_010 0.0072504606 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
6 Hb_000206_260 0.0081390275 - - cysteine protease, putative [Ricinus communis]
7 Hb_041626_010 0.010953701 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
8 Hb_073373_010 0.0115299069 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
9 Hb_159777_010 0.0129501981 - - JHL22C18.10 [Jatropha curcas]
10 Hb_065059_010 0.0134719113 - - PREDICTED: uncharacterized protein LOC104907634 [Beta vulgaris subsp. vulgaris]
11 Hb_000118_050 0.0137298734 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
12 Hb_008269_020 0.0137973528 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_000266_070 0.0142227177 desease resistance Gene Name: NB-ARC PREDICTED: uncharacterized protein LOC105765578 [Gossypium raimondii]
14 Hb_084299_010 0.0143914822 - - PREDICTED: uncharacterized protein LOC104233139 [Nicotiana sylvestris]
15 Hb_030085_050 0.0145435373 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
16 Hb_002656_040 0.014634407 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
17 Hb_000001_030 0.0148615299 - - polyprotein [Citrus endogenous pararetrovirus]
18 Hb_002020_030 0.0155328903 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
19 Hb_006617_030 0.016585265 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
20 Hb_010023_020 0.0167210297 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_031104_010 Hb_031104_010 Hb_048482_010 Hb_048482_010 Hb_031104_010--Hb_048482_010 Hb_000283_160 Hb_000283_160 Hb_031104_010--Hb_000283_160 Hb_072825_010 Hb_072825_010 Hb_031104_010--Hb_072825_010 Hb_104984_010 Hb_104984_010 Hb_031104_010--Hb_104984_010 Hb_000206_260 Hb_000206_260 Hb_031104_010--Hb_000206_260 Hb_041626_010 Hb_041626_010 Hb_031104_010--Hb_041626_010 Hb_048482_010--Hb_104984_010 Hb_048482_010--Hb_000206_260 Hb_048482_010--Hb_000283_160 Hb_048482_010--Hb_041626_010 Hb_073373_010 Hb_073373_010 Hb_048482_010--Hb_073373_010 Hb_000283_160--Hb_072825_010 Hb_065059_010 Hb_065059_010 Hb_000283_160--Hb_065059_010 Hb_000283_160--Hb_104984_010 Hb_000118_050 Hb_000118_050 Hb_000283_160--Hb_000118_050 Hb_072825_010--Hb_065059_010 Hb_072825_010--Hb_000118_050 Hb_008269_020 Hb_008269_020 Hb_072825_010--Hb_008269_020 Hb_084299_010 Hb_084299_010 Hb_072825_010--Hb_084299_010 Hb_104984_010--Hb_000206_260 Hb_104984_010--Hb_041626_010 Hb_104984_010--Hb_073373_010 Hb_159777_010 Hb_159777_010 Hb_104984_010--Hb_159777_010 Hb_000266_070 Hb_000266_070 Hb_104984_010--Hb_000266_070 Hb_000206_260--Hb_041626_010 Hb_000206_260--Hb_073373_010 Hb_000206_260--Hb_159777_010 Hb_000206_260--Hb_000266_070 Hb_041626_010--Hb_073373_010 Hb_041626_010--Hb_159777_010 Hb_041626_010--Hb_000266_070 Hb_030085_050 Hb_030085_050 Hb_041626_010--Hb_030085_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.011984 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0503337

CAGE analysis