Hb_072825_010

Information

Type -
Description -
Location Contig72825: 10-723
Sequence    

Annotation

kegg
ID tcc:TCM_023328
description hypothetical protein
nr
ID XP_007028088.1
description Uncharacterized protein TCM_023328 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061EU35
description Uncharacterized protein OS=Theobroma cacao GN=TCM_023328 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_072825_010 0.0 - - Uncharacterized protein TCM_023328 [Theobroma cacao]
2 Hb_000283_160 0.0034640536 - - hypothetical protein JCGZ_23510 [Jatropha curcas]
3 Hb_031104_010 0.0066685371 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
4 Hb_065059_010 0.0068038279 - - PREDICTED: uncharacterized protein LOC104907634 [Beta vulgaris subsp. vulgaris]
5 Hb_000118_050 0.007061816 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
6 Hb_008269_020 0.0071293023 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_084299_010 0.0077234944 - - PREDICTED: uncharacterized protein LOC104233139 [Nicotiana sylvestris]
8 Hb_002656_040 0.0079664458 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
9 Hb_000001_030 0.0081935941 - - polyprotein [Citrus endogenous pararetrovirus]
10 Hb_048482_010 0.0092164816 - - -
11 Hb_099586_010 0.010713493 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
12 Hb_009813_040 0.0119806606 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
13 Hb_104984_010 0.0139184796 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
14 Hb_000206_260 0.014806945 - - cysteine protease, putative [Ricinus communis]
15 Hb_041626_010 0.0176212407 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
16 Hb_073373_010 0.0181973587 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
17 Hb_002982_060 0.0183653976 - - hypothetical protein JCGZ_19604 [Jatropha curcas]
18 Hb_159777_010 0.0196174177 - - JHL22C18.10 [Jatropha curcas]
19 Hb_000266_070 0.0208897104 desease resistance Gene Name: NB-ARC PREDICTED: uncharacterized protein LOC105765578 [Gossypium raimondii]
20 Hb_030085_050 0.0212104701 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]

Gene co-expression network

sample Hb_072825_010 Hb_072825_010 Hb_000283_160 Hb_000283_160 Hb_072825_010--Hb_000283_160 Hb_031104_010 Hb_031104_010 Hb_072825_010--Hb_031104_010 Hb_065059_010 Hb_065059_010 Hb_072825_010--Hb_065059_010 Hb_000118_050 Hb_000118_050 Hb_072825_010--Hb_000118_050 Hb_008269_020 Hb_008269_020 Hb_072825_010--Hb_008269_020 Hb_084299_010 Hb_084299_010 Hb_072825_010--Hb_084299_010 Hb_000283_160--Hb_031104_010 Hb_048482_010 Hb_048482_010 Hb_000283_160--Hb_048482_010 Hb_000283_160--Hb_065059_010 Hb_104984_010 Hb_104984_010 Hb_000283_160--Hb_104984_010 Hb_000283_160--Hb_000118_050 Hb_031104_010--Hb_048482_010 Hb_031104_010--Hb_104984_010 Hb_000206_260 Hb_000206_260 Hb_031104_010--Hb_000206_260 Hb_041626_010 Hb_041626_010 Hb_031104_010--Hb_041626_010 Hb_065059_010--Hb_000118_050 Hb_065059_010--Hb_008269_020 Hb_065059_010--Hb_084299_010 Hb_002656_040 Hb_002656_040 Hb_065059_010--Hb_002656_040 Hb_000001_030 Hb_000001_030 Hb_065059_010--Hb_000001_030 Hb_099586_010 Hb_099586_010 Hb_065059_010--Hb_099586_010 Hb_000118_050--Hb_008269_020 Hb_000118_050--Hb_084299_010 Hb_000118_050--Hb_002656_040 Hb_000118_050--Hb_000001_030 Hb_000118_050--Hb_099586_010 Hb_008269_020--Hb_084299_010 Hb_008269_020--Hb_002656_040 Hb_008269_020--Hb_000001_030 Hb_008269_020--Hb_099586_010 Hb_084299_010--Hb_002656_040 Hb_084299_010--Hb_000001_030 Hb_084299_010--Hb_099586_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0468357 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.189075

CAGE analysis