Hb_000001_030

Information

Type -
Description -
Location Contig1: 53757-57053
Sequence    

Annotation

kegg
ID cam:101511883
description genome polyprotein-like
nr
ID YP_008992013.1
description polyprotein [Citrus endogenous pararetrovirus]
swissprot
ID Q91DM0
description Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd) PE=3 SV=1
trembl
ID V9QF33
description Polyprotein OS=Citrus endogenous pararetrovirus PE=4 SV=1
Gene Ontology
ID GO:0005488
description orf i polyprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000001_030 0.0 - - polyprotein [Citrus endogenous pararetrovirus]
2 Hb_002656_040 0.0002271589 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
3 Hb_084299_010 0.0004701212 - - PREDICTED: uncharacterized protein LOC104233139 [Nicotiana sylvestris]
4 Hb_008269_020 0.0010643367 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_000118_050 0.0011318254 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
6 Hb_065059_010 0.0013898222 - - PREDICTED: uncharacterized protein LOC104907634 [Beta vulgaris subsp. vulgaris]
7 Hb_099586_010 0.0025200579 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
8 Hb_009813_040 0.0037873332 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
9 Hb_072825_010 0.0081935941 - - Uncharacterized protein TCM_023328 [Theobroma cacao]
10 Hb_002982_060 0.0101728895 - - hypothetical protein JCGZ_19604 [Jatropha curcas]
11 Hb_000283_160 0.011657404 - - hypothetical protein JCGZ_23510 [Jatropha curcas]
12 Hb_068578_010 0.0142217096 - - PREDICTED: uncharacterized protein LOC105789577 [Gossypium raimondii]
13 Hb_001629_070 0.0144809591 transcription factor TF Family: ULT Protein ULTRAPETALA2, putative [Ricinus communis]
14 Hb_031104_010 0.0148615299 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
15 Hb_048482_010 0.0174090978 - - -
16 Hb_104984_010 0.0221101828 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
17 Hb_000206_260 0.0229984434 - - cysteine protease, putative [Ricinus communis]
18 Hb_189099_010 0.023447034 - - PREDICTED: uncharacterized protein At1g04910-like [Citrus sinensis]
19 Hb_041626_010 0.0258120219 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
20 Hb_073373_010 0.0263879801 - - hypothetical protein JCGZ_11284 [Jatropha curcas]

Gene co-expression network

sample Hb_000001_030 Hb_000001_030 Hb_002656_040 Hb_002656_040 Hb_000001_030--Hb_002656_040 Hb_084299_010 Hb_084299_010 Hb_000001_030--Hb_084299_010 Hb_008269_020 Hb_008269_020 Hb_000001_030--Hb_008269_020 Hb_000118_050 Hb_000118_050 Hb_000001_030--Hb_000118_050 Hb_065059_010 Hb_065059_010 Hb_000001_030--Hb_065059_010 Hb_099586_010 Hb_099586_010 Hb_000001_030--Hb_099586_010 Hb_002656_040--Hb_084299_010 Hb_002656_040--Hb_008269_020 Hb_002656_040--Hb_000118_050 Hb_002656_040--Hb_065059_010 Hb_002656_040--Hb_099586_010 Hb_084299_010--Hb_008269_020 Hb_084299_010--Hb_000118_050 Hb_084299_010--Hb_065059_010 Hb_084299_010--Hb_099586_010 Hb_008269_020--Hb_000118_050 Hb_008269_020--Hb_065059_010 Hb_008269_020--Hb_099586_010 Hb_000118_050--Hb_065059_010 Hb_000118_050--Hb_099586_010 Hb_065059_010--Hb_099586_010 Hb_009813_040 Hb_009813_040 Hb_099586_010--Hb_009813_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00657646 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0253042

CAGE analysis